RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 TRAV34A0A0B4J273 112 aa8.7□□□□□ -1.02
CLIP1-213ENST00000540338 GGCTO75223 188 aaKnown RBP8.7□□□□□ -1.02
CLIP1-213ENST00000540338 NTF3P20783 257 aa8.7□□□□□ -1.02
CLIP1-213ENST00000540338 CBLN1P23435 193 aa8.7□□□□□ -1.02
CLIP1-213ENST00000540338 CEP295Q9C0D2 2601 aa8.7□□□□□ -1.02
CLIP1-213ENST00000540338 IGHV2-5P01817 119 aa8.7□□□□□ -1.02
CLIP1-213ENST00000540338 MFAP2P55001 183 aa8.7□□□□□ -1.02
CLIP1-213ENST00000540338 LY96Q9Y6Y9 160 aa8.7□□□□□ -1.02
CLIP1-213ENST00000540338 TRAV20A0A0B4J274 112 aa8.7□□□□□ -1.02
CLIP1-213ENST00000540338 M0R1W7 72 aa8.7□□□□□ -1.02
CLIP1-213ENST00000540338 COL8A1P27658 744 aa8.7□□□□□ -1.02
CLIP1-213ENST00000540338 SGK494Q96LW2 274 aa8.7□□□□□ -1.02
CLIP1-213ENST00000540338 TRGV9Q99603 122 aa8.7□□□□□ -1.02
CLIP1-213ENST00000540338 MED13LQ71F56 2210 aa8.69□□□□□ -1.02
CLIP1-213ENST00000540338 FBXL19-AS1Q494R0 122 aa8.69□□□□□ -1.02
CLIP1-213ENST00000540338 C5orf17Q8NAS9 161 aa8.69□□□□□ -1.02
CLIP1-213ENST00000540338 TPSG1Q9NRR2 321 aa8.69□□□□□ -1.02
CLIP1-213ENST00000540338 F11RQ9Y624 299 aaKnown RBP8.69□□□□□ -1.02
CLIP1-213ENST00000540338 TRBV9A0A0B4J1U6 114 aa8.69□□□□□ -1.02
CLIP1-213ENST00000540338 IGHV2-70P01814 119 aa8.69□□□□□ -1.02
CLIP1-213ENST00000540338 FCGR2BP31994 310 aaPredicted RBP8.69□□□□□ -1.02
CLIP1-213ENST00000540338 GFI1BQ5VTD9 330 aa8.69□□□□□ -1.02
CLIP1-213ENST00000540338 HIST3H2BBQ8N257 126 aa8.69□□□□□ -1.02
CLIP1-213ENST00000540338 PRO1933Q9H354 126 aa8.69□□□□□ -1.02
CLIP1-213ENST00000540338 OSTCQ9NRP0 149 aa8.69□□□□□ -1.02
CLIP1-213ENST00000540338 KLF2Q9Y5W3 355 aaPredicted RBP8.69□□□□□ -1.02
CLIP1-213ENST00000540338 CHD3Q12873 2000 aaKnown RBP8.69□□□□□ -1.02
CLIP1-213ENST00000540338 ZNF785A8K8V0 405 aa8.69□□□□□ -1.02
CLIP1-213ENST00000540338 CNTFRP26992 372 aa8.69□□□□□ -1.02
CLIP1-213ENST00000540338 ECSCRQ19T08 205 aa8.69□□□□□ -1.02
CLIP1-213ENST00000540338 RNASE7Q9H1E1 156 aaKnown RBP8.69□□□□□ -1.02
CLIP1-213ENST00000540338 TNCP24821 2201 aa8.69□□□□□ -1.02
CLIP1-213ENST00000540338 A8MWL6 223 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 HSBP1O75506 76 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 APCSP02743 223 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 IL4P05112 153 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 PRTN3P24158 256 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 KLRD1Q13241 179 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 WNK2Q9Y3S1 2297 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 COL27A1Q8IZC6 1860 aaPredicted RBP8.68□□□□□ -1.02
CLIP1-213ENST00000540338 HLA-DQA1P01909 254 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 SOD3P08294 240 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 FAM162BQ5T6X4 162 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 DMRTC2Q8IXT2 367 aaPredicted RBP8.68□□□□□ -1.02
CLIP1-213ENST00000540338 ARPC1AQ92747 370 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 IGF2RP11717 2491 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 PMCHP20382 165 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 PLA2G5P39877 138 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 PRNTQ86SH4 94 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 NDFIP1Q9BT67 221 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 AKAP6Q13023 2319 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 KRTDAPP60985 99 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 C8orf46Q8TAG6 207 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 GSN-AS1Q9NRJ2 163 aa8.68□□□□□ -1.02
CLIP1-213ENST00000540338 TNRC18O15417 2968 aaPredicted RBP8.67□□□□□ -1.02
CLIP1-213ENST00000540338 GRIFINA4D1Z8 144 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 GCGP01275 180 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 NPPCP23582 126 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 PDLIM4P50479 330 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 UNQ5815/PRO19632Q6UWF5 114 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 UNQ6494/PRO21346Q6UXR6 183 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 EPDR1Q9UM22 224 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 AMTP48728 403 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 EFNA4P52798 201 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 PAFAH1B2P68402 229 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 DMRT1Q9Y5R6 373 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 S4R3C0 116 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 PRSS46E5RG02 174 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 AMY1AP04745 511 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 SSTP61278 116 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 LEMD1Q68G75 181 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 FNDC4Q9H6D8 234 aaPredicted RBP8.67□□□□□ -1.02
CLIP1-213ENST00000540338 CDC42EP3Q9UKI2 254 aa8.67□□□□□ -1.02
CLIP1-213ENST00000540338 A0A087X0M5 115 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 A0A1B0GX30 115 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 ISLRO14498 428 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 PSG1P11464 419 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 ADORA2A-AS1P86434 159 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 TOMM20LQ6UXN7 152 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 ZNF114Q8NC26 417 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 C11orf52Q96A22 123 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 OOSP1A8MZH6 123 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 GOSR1O95249 250 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 PKIAP61925 76 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 VMO1Q7Z5L0 202 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 ST6GALNAC6Q969X2 333 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 GPR82Q96P67 336 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 HIST1H2BLQ99880 126 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 Q9H3A6 140 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 C21orf62Q9NYP8 219 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 OR2J3O76001 311 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 GNG5P63218 68 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 CLEC2AQ6UVW9 174 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 OR2D3Q8NGH3 330 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 GRAMD2BQ96HH9 432 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 SRSF8Q9BRL6 282 aaKnown RBP8.66□□□□□ -1.02
CLIP1-213ENST00000540338 C22orf46C9J442 243 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 ZNF137PP52743 207 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 C5orf64Q2M2E5 130 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 KIAA1644Q3SXP7 199 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms