RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 CACFD1Q9UGQ2 172 aa11.24□□□□□ -0.61
UBE3B-212ENST00000540230 U3KQ87 197 aa11.24□□□□□ -0.61
UBE3B-212ENST00000540230 IGKV3-7A0A075B6H7 116 aa11.23□□□□□ -0.61
UBE3B-212ENST00000540230 ODF3L2Q3SX64 289 aa11.23□□□□□ -0.61
UBE3B-212ENST00000540230 FAM90A2PQ658T7 463 aa11.23□□□□□ -0.61
UBE3B-212ENST00000540230 LAMTOR1Q6IAA8 161 aa11.23□□□□□ -0.61
UBE3B-212ENST00000540230 NPIPB3Q92617 1050 aa11.23□□□□□ -0.61
UBE3B-212ENST00000540230 MAGT1Q9H0U3 335 aa11.23□□□□□ -0.61
UBE3B-212ENST00000540230 C20orf85Q9H1P6 137 aa11.23□□□□□ -0.61
UBE3B-212ENST00000540230 NBEAL2Q6ZNJ1 2754 aa11.22□□□□□ -0.61
UBE3B-212ENST00000540230 PIGBOS1A0A0B4J2F0 54 aa11.22□□□□□ -0.61
UBE3B-212ENST00000540230 SLC25A4P12235 298 aa11.22□□□□□ -0.61
UBE3B-212ENST00000540230 C4orf46Q504U0 113 aa11.22□□□□□ -0.61
UBE3B-212ENST00000540230 ACY3Q96HD9 319 aa11.22□□□□□ -0.61
UBE3B-212ENST00000540230 GINS3Q9BRX5 216 aa11.22□□□□□ -0.61
UBE3B-212ENST00000540230 CCDC32Q9BV29 185 aa11.22□□□□□ -0.61
UBE3B-212ENST00000540230 VSIRQ9H7M9 311 aa11.22□□□□□ -0.61
UBE3B-212ENST00000540230 FAM90A26D6RGX4 464 aa11.21□□□□□ -0.61
UBE3B-212ENST00000540230 OR10J1P30954 320 aa11.21□□□□□ -0.61
UBE3B-212ENST00000540230 TFPI2P48307 235 aa11.21□□□□□ -0.61
UBE3B-212ENST00000540230 OR1S2Q8NGQ3 325 aa11.21□□□□□ -0.61
UBE3B-212ENST00000540230 TRAV30A0A087WSZ9 112 aa11.2□□□□□ -0.62
UBE3B-212ENST00000540230 WRBO00258 174 aa11.2□□□□□ -0.62
UBE3B-212ENST00000540230 IFNA4P05014 189 aa11.2□□□□□ -0.62
UBE3B-212ENST00000540230 LINC00299Q6ZSB3 139 aa11.2□□□□□ -0.62
UBE3B-212ENST00000540230 TCF24Q7RTU0 167 aa11.2□□□□□ -0.62
UBE3B-212ENST00000540230 NOXA1Q86UR1 476 aa11.2□□□□□ -0.62
UBE3B-212ENST00000540230 GBGT1Q8N5D6 347 aa11.2□□□□□ -0.62
UBE3B-212ENST00000540230 COQ8AQ8NI60 647 aa11.2□□□□□ -0.62
UBE3B-212ENST00000540230 SPATA25Q9BR10 227 aa11.2□□□□□ -0.62
UBE3B-212ENST00000540230 TBC1D24Q9ULP9 559 aa11.2□□□□□ -0.62
UBE3B-212ENST00000540230 STARD9Q9P2P6 4700 aa11.2□□□□□ -0.62
UBE3B-212ENST00000540230 TRAV6A0A075B6T7 132 aa11.19□□□□□ -0.62
UBE3B-212ENST00000540230 SYNGR2O43760 224 aa11.19□□□□□ -0.62
UBE3B-212ENST00000540230 DFFBO76075 338 aa11.19□□□□□ -0.62
UBE3B-212ENST00000540230 TCRBP04435 133 aa11.19□□□□□ -0.62
UBE3B-212ENST00000540230 ZNF124Q15973 351 aa11.19□□□□□ -0.62
UBE3B-212ENST00000540230 ETFRF1Q6IPR1 90 aa11.19□□□□□ -0.62
UBE3B-212ENST00000540230 FAM110AQ9BQ89 295 aa11.19□□□□□ -0.62
UBE3B-212ENST00000540230 IGKV1D-37A0A075B6S9 117 aa11.19□□□□□ -0.62
UBE3B-212ENST00000540230 OR4C46A6NHA9 309 aa11.19□□□□□ -0.62
UBE3B-212ENST00000540230 H3BP45 60 aa11.19□□□□□ -0.62
UBE3B-212ENST00000540230 NPPCP23582 126 aa11.19□□□□□ -0.62
UBE3B-212ENST00000540230 CRYBB3P26998 211 aa11.19□□□□□ -0.62
UBE3B-212ENST00000540230 YPEL3P61236 119 aaPredicted RBP11.19□□□□□ -0.62
UBE3B-212ENST00000540230 POLR2GP62487 172 aaKnown RBP eCLIP11.19□□□□□ -0.62
UBE3B-212ENST00000540230 GAMTQ14353 236 aa11.19□□□□□ -0.62
UBE3B-212ENST00000540230 USF2Q15853 346 aaPredicted RBP11.19□□□□□ -0.62
UBE3B-212ENST00000540230 OR4D5Q8NGN0 318 aa11.19□□□□□ -0.62
UBE3B-212ENST00000540230 NUDT15Q9NV35 164 aa11.19□□□□□ -0.62
UBE3B-212ENST00000540230 PTTG2Q9NZH5 202 aa11.19□□□□□ -0.62
UBE3B-212ENST00000540230 PAIP2BQ9ULR5 123 aaKnown RBP11.19□□□□□ -0.62
UBE3B-212ENST00000540230 CSMD3Q7Z407 3707 aa11.18□□□□□ -0.62
UBE3B-212ENST00000540230 PRSS46E5RG02 174 aa11.18□□□□□ -0.62
UBE3B-212ENST00000540230 SCGB2A1O75556 95 aa11.18□□□□□ -0.62
UBE3B-212ENST00000540230 MED6O75586 246 aa11.18□□□□□ -0.62
UBE3B-212ENST00000540230 ID3Q02535 119 aa11.18□□□□□ -0.62
UBE3B-212ENST00000540230 WFDC3Q8IUB2 231 aa11.18□□□□□ -0.62
UBE3B-212ENST00000540230 APRG1Q8IVJ8 170 aa11.18□□□□□ -0.62
UBE3B-212ENST00000540230 MITD1Q8WV92 249 aa11.18□□□□□ -0.62
UBE3B-212ENST00000540230 S100ZQ8WXG8 99 aa11.18□□□□□ -0.62
UBE3B-212ENST00000540230 METTL26Q96S19 204 aa11.18□□□□□ -0.62
UBE3B-212ENST00000540230 SEC22CQ9BRL7 303 aa11.18□□□□□ -0.62
UBE3B-212ENST00000540230 CCSO14618 274 aa11.17□□□□□ -0.62
UBE3B-212ENST00000540230 TOMM40O96008 361 aa11.17□□□□□ -0.62
UBE3B-212ENST00000540230 IL4P05112 153 aa11.17□□□□□ -0.62
UBE3B-212ENST00000540230 PSG1P11464 419 aa11.17□□□□□ -0.62
UBE3B-212ENST00000540230 ATP5IP56385 69 aaPredicted RBP11.17□□□□□ -0.62
UBE3B-212ENST00000540230 IFITM3Q01628 133 aa11.17□□□□□ -0.62
UBE3B-212ENST00000540230 ZNF90Q03938 601 aa11.17□□□□□ -0.62
UBE3B-212ENST00000540230 SPANXN5Q5MJ07 72 aa11.17□□□□□ -0.62
UBE3B-212ENST00000540230 FAM24BQ8N5W8 94 aa11.17□□□□□ -0.62
UBE3B-212ENST00000540230 Q8WTZ3 238 aa11.17□□□□□ -0.62
UBE3B-212ENST00000540230 GGTLC1Q9BX51 225 aa11.17□□□□□ -0.62
UBE3B-212ENST00000540230 MS4A6AQ9H2W1 248 aa11.17□□□□□ -0.62
UBE3B-212ENST00000540230 EDA2RQ9HAV5 297 aa11.17□□□□□ -0.62
UBE3B-212ENST00000540230 U3KQE9 123 aa11.17□□□□□ -0.62
UBE3B-212ENST00000540230 IGKV1OR2-108A0A075B7D4 117 aa11.16□□□□□ -0.62
UBE3B-212ENST00000540230 LOC102724200A0A096LPH7 203 aaPredicted RBP11.16□□□□□ -0.62
UBE3B-212ENST00000540230 IFNA21P01568 189 aa11.16□□□□□ -0.62
UBE3B-212ENST00000540230 GPX4P36969 197 aaPredicted RBP11.16□□□□□ -0.62
UBE3B-212ENST00000540230 NKX2-1P43699 371 aaPredicted RBP11.16□□□□□ -0.62
UBE3B-212ENST00000540230 P2RY1P47900 373 aa11.16□□□□□ -0.62
UBE3B-212ENST00000540230 RAB11AP62491 216 aa11.16□□□□□ -0.62
UBE3B-212ENST00000540230 SLC35E1Q96K37 410 aa11.16□□□□□ -0.62
UBE3B-212ENST00000540230 CIB3Q96Q77 187 aaPredicted RBP11.16□□□□□ -0.62
UBE3B-212ENST00000540230 MAP6D1Q9H9H5 199 aa11.16□□□□□ -0.62
UBE3B-212ENST00000540230 RD3LP0DJH9 198 aa11.15□□□□□ -0.62
UBE3B-212ENST00000540230 BMI1P35226 326 aa11.15□□□□□ -0.62
UBE3B-212ENST00000540230 IAH1Q2TAA2 248 aaPredicted RBP11.15□□□□□ -0.62
UBE3B-212ENST00000540230 OR51G1Q8NGK1 321 aa11.15□□□□□ -0.62
UBE3B-212ENST00000540230 ZFP92A6NM28 416 aa11.14□□□□□ -0.63
UBE3B-212ENST00000540230 SSSCA1O60232 199 aa11.14□□□□□ -0.63
UBE3B-212ENST00000540230 UPK1BO75841 260 aa11.14□□□□□ -0.63
UBE3B-212ENST00000540230 CCNKO75909 580 aa11.14□□□□□ -0.63
UBE3B-212ENST00000540230 SCGB1D2O95969 90 aa11.14□□□□□ -0.63
UBE3B-212ENST00000540230 HNRNPCP07910 306 aaKnown RBP eCLIP11.14□□□□□ -0.63
UBE3B-212ENST00000540230 PAX9P55771 341 aa11.14□□□□□ -0.63
UBE3B-212ENST00000540230 RPL11P62913 178 aaKnown RBP11.14□□□□□ -0.63
UBE3B-212ENST00000540230 ASAH1Q13510 395 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms