RNA–Protein interactions for RNA: ENST00000538696.5

CLN6-202, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2 BASIC

Gene CLN6, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-202ENST00000538696 LCNL1Q6ZST4 164 aa13.4□□□□□ -0.26
CLN6-202ENST00000538696 IGKV1OR2-108A0A075B7D4 117 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 H3BUA1 57 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 I3L2K1 104 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 AGPAT2O15120 278 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 ELANEP08246 267 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 PF4V1P10720 104 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 CD28P10747 220 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 DEFA4P12838 97 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 RND2P52198 227 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 RAB2AP61019 212 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 SERF2P84101 59 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 DEFA5Q01523 94 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 MIC13Q5XKP0 118 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 TEX38Q6PEX7 206 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 COMMD1Q8N668 190 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 OR4X2Q8NGF9 303 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 FANCD2OSQ96PS1 177 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 MDFIQ99750 246 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 KLK15Q9H2R5 256 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 RPRMQ9NS64 109 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 IGLV11-55A0A075B6I3 123 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 OR10J1P30954 320 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 ZNF616Q08AN1 781 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 TMEM41BQ5BJD5 291 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 ETFRF1Q6IPR1 90 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 RNF152Q8N8N0 203 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 C11orf44Q8N8P7 122 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 OR1L6Q8NGR2 347 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 NPIPB3Q92617 1050 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 MS4A10Q96PG2 267 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 ZNF355PQ9NSJ1 428 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 MED9Q9NWA0 146 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 PFDN2Q9UHV9 154 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 PXMP4Q9Y6I8 212 aa13.39□□□□□ -0.27
CLN6-202ENST00000538696 K7EIM0 57 aa13.38□□□□□ -0.27
CLN6-202ENST00000538696 YIF1AO95070 293 aa13.38□□□□□ -0.27
CLN6-202ENST00000538696 BRI3O95415 125 aa13.38□□□□□ -0.27
CLN6-202ENST00000538696 RPLP1P05386 114 aaKnown RBP13.38□□□□□ -0.27
CLN6-202ENST00000538696 KLK9Q2XQG4 91 aa13.38□□□□□ -0.27
CLN6-202ENST00000538696 THAP8Q8NA92 274 aa13.38□□□□□ -0.27
CLN6-202ENST00000538696 MYOZ3Q8TDC0 251 aa13.38□□□□□ -0.27
CLN6-202ENST00000538696 HRH4Q9H3N8 390 aa13.38□□□□□ -0.27
CLN6-202ENST00000538696 KLK9Q9UKQ9 250 aa13.38□□□□□ -0.27
CLN6-202ENST00000538696 SLC45A2Q9UMX9 530 aa13.38□□□□□ -0.27
CLN6-202ENST00000538696 IGKV1D-37A0A075B6S9 117 aa13.37□□□□□ -0.27
CLN6-202ENST00000538696 TRBV9A0A0B4J1U6 114 aa13.37□□□□□ -0.27
CLN6-202ENST00000538696 TRGV3P03979 118 aa13.37□□□□□ -0.27
CLN6-202ENST00000538696 RAB9AP51151 201 aa13.37□□□□□ -0.27
CLN6-202ENST00000538696 TPPP2P59282 170 aa13.37□□□□□ -0.27
CLN6-202ENST00000538696 RAB31Q13636 194 aa13.37□□□□□ -0.27
CLN6-202ENST00000538696 ZNF726P1Q15940 193 aa13.37□□□□□ -0.27
CLN6-202ENST00000538696 DPPA3Q6W0C5 159 aa13.37□□□□□ -0.27
CLN6-202ENST00000538696 C12orf54Q6X4T0 127 aa13.37□□□□□ -0.27
CLN6-202ENST00000538696 SSX7Q7RTT5 188 aa13.37□□□□□ -0.27
CLN6-202ENST00000538696 STPG3Q8N7X2 389 aa13.37□□□□□ -0.27
CLN6-202ENST00000538696 KCNIP2Q9NS61 270 aa13.37□□□□□ -0.27
CLN6-202ENST00000538696 A0A1B0GV50 99 aa13.36□□□□□ -0.27
CLN6-202ENST00000538696 EIF3GO75821 320 aaKnown RBP eCLIP13.36□□□□□ -0.27
CLN6-202ENST00000538696 OR2J3O76001 311 aa13.36□□□□□ -0.27
CLN6-202ENST00000538696 NDUFB8O95169 186 aa13.36□□□□□ -0.27
CLN6-202ENST00000538696 LINC00869P0C866 280 aa13.36□□□□□ -0.27
CLN6-202ENST00000538696 RPL29P47914 159 aaKnown RBP13.36□□□□□ -0.27
CLN6-202ENST00000538696 RHOGP84095 191 aa13.36□□□□□ -0.27
CLN6-202ENST00000538696 PRR20EP86478 221 aa13.36□□□□□ -0.27
CLN6-202ENST00000538696 PRR20CP86479 221 aa13.36□□□□□ -0.27
CLN6-202ENST00000538696 PRR20DP86480 221 aa13.36□□□□□ -0.27
CLN6-202ENST00000538696 PRR20BP86481 221 aa13.36□□□□□ -0.27
CLN6-202ENST00000538696 PRR20AP86496 221 aa13.36□□□□□ -0.27
CLN6-202ENST00000538696 KIAA0141Q14154 515 aaPredicted RBP13.36□□□□□ -0.27
CLN6-202ENST00000538696 GCSAMLQ5JQS6 135 aa13.36□□□□□ -0.27
CLN6-202ENST00000538696 CYP2G1PQ6ZSU1 146 aa13.36□□□□□ -0.27
CLN6-202ENST00000538696 RCC1LQ96I51 464 aaKnown RBP13.36□□□□□ -0.27
CLN6-202ENST00000538696 CITED1Q99966 193 aa13.36□□□□□ -0.27
CLN6-202ENST00000538696 CITED2Q99967 270 aaPredicted RBP13.36□□□□□ -0.27
CLN6-202ENST00000538696 SLC39A9Q9NUM3 307 aa13.36□□□□□ -0.27
CLN6-202ENST00000538696 MFSD2BA6NFX1 497 aa13.35□□□□□ -0.27
CLN6-202ENST00000538696 TSPAN15O95858 294 aa13.35□□□□□ -0.27
CLN6-202ENST00000538696 HIST1H1BP16401 226 aaKnown RBP13.35□□□□□ -0.27
CLN6-202ENST00000538696 GATA2P23769 480 aaPredicted RBP13.35□□□□□ -0.27
CLN6-202ENST00000538696 B2MP61769 119 aa13.35□□□□□ -0.27
CLN6-202ENST00000538696 ACOT6Q3I5F7 207 aaPredicted RBP13.35□□□□□ -0.27
CLN6-202ENST00000538696 KRTAP21-3Q3LHN1 58 aa13.35□□□□□ -0.27
CLN6-202ENST00000538696 FAM122CQ6P4D5 195 aa13.35□□□□□ -0.27
CLN6-202ENST00000538696 SPSB3Q6PJ21 355 aa13.35□□□□□ -0.27
CLN6-202ENST00000538696 BPIFCQ8NFQ6 507 aa13.35□□□□□ -0.27
CLN6-202ENST00000538696 LYPD6BQ8NI32 183 aa13.35□□□□□ -0.27
CLN6-202ENST00000538696 CITED4Q96RK1 184 aa13.35□□□□□ -0.27
CLN6-202ENST00000538696 ZNF747Q9BV97 191 aa13.35□□□□□ -0.27
CLN6-202ENST00000538696 FBXL7Q9UJT9 491 aa13.35□□□□□ -0.27
CLN6-202ENST00000538696 S4R3C0 116 aa13.35□□□□□ -0.27
CLN6-202ENST00000538696 TCRBV4S1A1TA0A5B7 111 aa13.34□□□□□ -0.27
CLN6-202ENST00000538696 CYB5BO43169 146 aa13.34□□□□□ -0.27
CLN6-202ENST00000538696 MBP02144 154 aa13.34□□□□□ -0.27
CLN6-202ENST00000538696 M6PRP20645 277 aa13.34□□□□□ -0.27
CLN6-202ENST00000538696 KHDC1LQ5JSQ8 128 aa13.34□□□□□ -0.27
CLN6-202ENST00000538696 C18orf65Q6ZTR6 163 aa13.34□□□□□ -0.27
CLN6-202ENST00000538696 RPP25LQ8N5L8 163 aaKnown RBP13.34□□□□□ -0.27
CLN6-202ENST00000538696 ZNF491Q8N8L2 437 aa13.34□□□□□ -0.27
CLN6-202ENST00000538696 NECAP1Q8NC96 275 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms