RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 C17orf99Q6UX52 265 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 PIP4P2Q8N4L2 257 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 SLC37A2Q8TED4 501 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 HS3ST6Q96QI5 342 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 SLC25A33Q9BSK2 321 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 CHRNA10Q9GZZ6 450 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 FCN3O75636 299 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 P01737 135 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 COL9A1P20849 921 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 ZNF138P52744 262 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 GAGE2BQ13066 116 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 C12orf74Q32Q52 190 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 GAGE2EQ4V326 116 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 GATD1Q8NB37 220 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.11□□□□□ -0.79
USP3-203ENST00000538686 PATE1Q8WXA2 126 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 DLX4Q92988 240 aaPredicted RBP10.11□□□□□ -0.79
USP3-203ENST00000538686 PTH2Q96A98 100 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 GAGE2DQ9UEU5 116 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 TCF19Q9Y242 345 aa10.11□□□□□ -0.79
USP3-203ENST00000538686 ZNF32P17041 273 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 DUTP33316 252 aaKnown RBP10.1□□□□□ -0.79
USP3-203ENST00000538686 CFHR2P36980 270 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 MEOX1P50221 254 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 PLP2Q04941 152 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 OR1C1Q15619 314 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 TTC32Q5I0X7 151 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 LYRM7Q5U5X0 104 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 PIP4P1Q86T03 277 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 ABHD12Q8N2K0 398 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 NPIPB5A8MRT5 1133 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 WIPF1O43516 503 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 CSN3P07498 182 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 ZNF688P0C7X2 276 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 IFITM1P13164 125 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 ASIPP42127 132 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 ATP5IP56385 69 aaPredicted RBP10.1□□□□□ -0.79
USP3-203ENST00000538686 RUNX3Q13761 415 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 C3AR1Q16581 482 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 LINC00696Q6ZRV3 163 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 PGLYRP4Q96LB8 373 aa10.1□□□□□ -0.79
USP3-203ENST00000538686 FAM90A27PA6NNH2 459 aa10.09□□□□□ -0.79
USP3-203ENST00000538686 BRWD1-AS2P59051 145 aa10.09□□□□□ -0.79
USP3-203ENST00000538686 UBE2L3P68036 154 aaKnown RBP10.09□□□□□ -0.79
USP3-203ENST00000538686 HHEXQ03014 270 aa10.09□□□□□ -0.79
USP3-203ENST00000538686 FHL3Q13643 280 aa10.09□□□□□ -0.79
USP3-203ENST00000538686 LINC01559Q495D7 138 aa10.09□□□□□ -0.79
USP3-203ENST00000538686 PRR30Q53SZ7 412 aaPredicted RBP10.09□□□□□ -0.79
USP3-203ENST00000538686 C2orf27AQ580R0 203 aa10.09□□□□□ -0.79
USP3-203ENST00000538686 TEN1Q86WV5 123 aa10.09□□□□□ -0.79
USP3-203ENST00000538686 OR5AN1Q8NGI8 311 aa10.09□□□□□ -0.79
USP3-203ENST00000538686 RND1Q92730 232 aa10.09□□□□□ -0.79
USP3-203ENST00000538686 OR2H1Q9GZK4 316 aa10.09□□□□□ -0.79
USP3-203ENST00000538686 TET1Q8NFU7 2136 aa10.09□□□□□ -0.79
USP3-203ENST00000538686 HBDP02042 147 aa10.08□□□□□ -0.8
USP3-203ENST00000538686 ZNF137PP52743 207 aa10.08□□□□□ -0.8
USP3-203ENST00000538686 ERVK-16P61578 105 aa10.08□□□□□ -0.8
USP3-203ENST00000538686 PLGLB1Q02325 96 aa10.08□□□□□ -0.8
USP3-203ENST00000538686 AMTNQ6UX39 209 aa10.08□□□□□ -0.8
USP3-203ENST00000538686 ZNF329Q86UD4 541 aa10.08□□□□□ -0.8
USP3-203ENST00000538686 DAZAP1Q96EP5 407 aaKnown RBP10.08□□□□□ -0.8
USP3-203ENST00000538686 TRBV25-1A0A075B6N4 114 aa10.08□□□□□ -0.8
USP3-203ENST00000538686 SRRM4A7MD48 611 aaKnown RBP10.08□□□□□ -0.8
USP3-203ENST00000538686 YPEL5P62699 121 aa10.08□□□□□ -0.8
USP3-203ENST00000538686 RIGQ13278 110 aa10.08□□□□□ -0.8
USP3-203ENST00000538686 YRDCQ86U90 279 aaKnown RBP10.08□□□□□ -0.8
USP3-203ENST00000538686 NFE4Q86UQ8 179 aa10.08□□□□□ -0.8
USP3-203ENST00000538686 NRGNQ92686 78 aa10.08□□□□□ -0.8
USP3-203ENST00000538686 RPEQ96AT9 228 aa10.08□□□□□ -0.8
USP3-203ENST00000538686 IFI27L1Q96BM0 104 aa10.08□□□□□ -0.8
USP3-203ENST00000538686 LINC01619G3V211 115 aa10.07□□□□□ -0.8
USP3-203ENST00000538686 CCDC179H3BU77 68 aa10.07□□□□□ -0.8
USP3-203ENST00000538686 CXCL10P02778 98 aa10.07□□□□□ -0.8
USP3-203ENST00000538686 CD24P25063 80 aa10.07□□□□□ -0.8
USP3-203ENST00000538686 ADIPOQQ15848 244 aa10.07□□□□□ -0.8
USP3-203ENST00000538686 SLC25A48Q6ZT89 311 aaKnown RBP10.07□□□□□ -0.8
USP3-203ENST00000538686 FGF23Q9GZV9 251 aaPredicted RBP10.07□□□□□ -0.8
USP3-203ENST00000538686 KLF12Q9Y4X4 402 aa10.07□□□□□ -0.8
USP3-203ENST00000538686 ARHGEF17Q96PE2 2063 aaPredicted RBP10.07□□□□□ -0.8
USP3-203ENST00000538686 TNRC6BQ9UPQ9 1833 aaKnown RBP10.07□□□□□ -0.8
USP3-203ENST00000538686 C19orf71A6NCJ1 209 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 M0QXV9 152 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 NDUFS7O75251 213 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 SNCGO76070 127 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 RBP4P02753 201 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 ATP5J2P56134 94 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 DSCR4P56555 118 aaPredicted RBP10.06□□□□□ -0.8
USP3-203ENST00000538686 Q8IYB0 196 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 LINC00479Q96M42 142 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 SLC25A2Q9BXI2 301 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 FAM234AQ9H0X4 552 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 ENY2Q9NPA8 101 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 A0A096LNJ9 63 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 PRTN3P24158 256 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 DIAPH2-AS1Q14236 149 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 GLMPQ8WWB7 406 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 RITA1Q96K30 269 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 MLST8Q9BVC4 326 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 RAB9BQ9NP90 201 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 PTPRSQ13332 1948 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms