RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 LINC00173Q6ZV60 143 aa8.97□□□□□ -0.97
CLSTN3-207ENST00000537408 OBP2BQ9NPH6 170 aa8.97□□□□□ -0.97
CLSTN3-207ENST00000537408 SHANK1Q9Y566 2161 aa8.97□□□□□ -0.97
CLSTN3-207ENST00000537408 CHEK1O14757 476 aa8.97□□□□□ -0.97
CLSTN3-207ENST00000537408 GNLYP22749 145 aa8.97□□□□□ -0.97
CLSTN3-207ENST00000537408 RPL32P62910 135 aaKnown RBP8.97□□□□□ -0.97
CLSTN3-207ENST00000537408 HBBP68871 147 aa8.97□□□□□ -0.97
CLSTN3-207ENST00000537408 TRAT1Q6PIZ9 186 aa8.97□□□□□ -0.97
CLSTN3-207ENST00000537408 SNRNP40Q96DI7 357 aaKnown RBP8.97□□□□□ -0.97
CLSTN3-207ENST00000537408 IGKV3-11P04433 115 aa8.96□□□□□ -0.97
CLSTN3-207ENST00000537408 ARPC1AQ92747 370 aa8.96□□□□□ -0.97
CLSTN3-207ENST00000537408 DEPPQ9NTK1 212 aa8.96□□□□□ -0.97
CLSTN3-207ENST00000537408 MAGEA5P43359 124 aa8.96□□□□□ -0.98
CLSTN3-207ENST00000537408 FOXA3P55318 350 aaPredicted RBP8.96□□□□□ -0.98
CLSTN3-207ENST00000537408 PSG5Q15238 335 aa8.96□□□□□ -0.98
CLSTN3-207ENST00000537408 SYT8Q8NBV8 401 aa8.96□□□□□ -0.98
CLSTN3-207ENST00000537408 IMMP1LQ96LU5 166 aa8.96□□□□□ -0.98
CLSTN3-207ENST00000537408 C1QTNF5Q9BXJ0 243 aa8.96□□□□□ -0.98
CLSTN3-207ENST00000537408 MBNL3Q9NUK0 354 aaKnown RBP8.96□□□□□ -0.98
CLSTN3-207ENST00000537408 RTTNQ86VV8 2226 aa8.96□□□□□ -0.98
CLSTN3-207ENST00000537408 C3orf80F5H4A9 247 aa8.96□□□□□ -0.98
CLSTN3-207ENST00000537408 PRB1P04280 392 aa8.96□□□□□ -0.98
CLSTN3-207ENST00000537408 FAM120AOSQ5T036 256 aa8.96□□□□□ -0.98
CLSTN3-207ENST00000537408 Q6ZS92 163 aa8.96□□□□□ -0.98
CLSTN3-207ENST00000537408 TEX45Q8NA69 505 aa8.96□□□□□ -0.98
CLSTN3-207ENST00000537408 A0A096LPE4 126 aa8.95□□□□□ -0.98
CLSTN3-207ENST00000537408 A0A1W2PPZ6 126 aa8.95□□□□□ -0.98
CLSTN3-207ENST00000537408 Q6ZSR3 168 aa8.95□□□□□ -0.98
CLSTN3-207ENST00000537408 TTTY12Q9BZ98 90 aa8.95□□□□□ -0.98
CLSTN3-207ENST00000537408 IGKV3D-11A0A0A0MRZ8 115 aa8.95□□□□□ -0.98
CLSTN3-207ENST00000537408 SH2D6Q7Z4S9 175 aa8.95□□□□□ -0.98
CLSTN3-207ENST00000537408 NUP35Q8NFH5 326 aa8.95□□□□□ -0.98
CLSTN3-207ENST00000537408 NDFIP1Q9BT67 221 aa8.95□□□□□ -0.98
CLSTN3-207ENST00000537408 MCRIP2Q9BUT9 160 aaKnown RBP8.95□□□□□ -0.98
CLSTN3-207ENST00000537408 INTS1Q8N201 2190 aaKnown RBP8.95□□□□□ -0.98
CLSTN3-207ENST00000537408 CLPSP04118 112 aa8.95□□□□□ -0.98
CLSTN3-207ENST00000537408 PPP1R35Q8TAP8 253 aa8.95□□□□□ -0.98
CLSTN3-207ENST00000537408 ZNF355PQ9NSJ1 428 aa8.95□□□□□ -0.98
CLSTN3-207ENST00000537408 SOX21Q9Y651 276 aaPredicted RBP8.95□□□□□ -0.98
CLSTN3-207ENST00000537408 RRHO14718 337 aa8.94□□□□□ -0.98
CLSTN3-207ENST00000537408 GATA3P23771 443 aa8.94□□□□□ -0.98
CLSTN3-207ENST00000537408 NMUP48645 174 aa8.94□□□□□ -0.98
CLSTN3-207ENST00000537408 Q6ZPA2 131 aa8.94□□□□□ -0.98
CLSTN3-207ENST00000537408 NHLRC2Q8NBF2 726 aa8.94□□□□□ -0.98
CLSTN3-207ENST00000537408 SNRNP200O75643 2136 aaKnown RBP8.94□□□□□ -0.98
CLSTN3-207ENST00000537408 PMS2P5A8MQ11 134 aa8.94□□□□□ -0.98
CLSTN3-207ENST00000537408 ZNF816Q0VGE8 651 aaPredicted RBP8.94□□□□□ -0.98
CLSTN3-207ENST00000537408 RANBP2P49792 3224 aaKnown RBP8.94□□□□□ -0.98
CLSTN3-207ENST00000537408 IGKV1-6A0A0C4DH72 117 aa8.94□□□□□ -0.98
CLSTN3-207ENST00000537408 SSMEM1Q8WWF3 244 aa8.94□□□□□ -0.98
CLSTN3-207ENST00000537408 C1QTNF4Q9BXJ3 329 aa8.94□□□□□ -0.98
CLSTN3-207ENST00000537408 MYO18BQ8IUG5 2567 aa8.94□□□□□ -0.98
CLSTN3-207ENST00000537408 ZDHHC16Q969W1 377 aa8.94□□□□□ -0.98
CLSTN3-207ENST00000537408 F11RQ9Y624 299 aaKnown RBP8.94□□□□□ -0.98
CLSTN3-207ENST00000537408 CEP192Q8TEP8 1941 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 GAGE12JA6NER3 117 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 GAGE7O76087 117 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 GAGE12FP0CL80 117 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 GAGE12GP0CL81 117 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 GAGE12IP0CL82 117 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 BCL3P20749 454 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 VDAC2P45880 294 aaPredicted RBP8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 GAGE4Q13068 117 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 TM4SF20Q53R12 229 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 SPINK9Q5DT21 86 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 SLC35E4Q6ICL7 350 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 HEYLQ9NQ87 328 aaPredicted RBP8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 SLC25A10Q9UBX3 287 aaPredicted RBP8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 A8MWL6 223 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 FGF12P61328 243 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 PSMG4Q5JS54 123 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 PCSK4Q6UW60 755 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 TMEM54Q969K7 222 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 FASNP49327 2511 aaKnown RBP8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 C5orf49A4QMS7 147 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 HIGD1CA8MV81 97 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 SPATA46Q5T0L3 261 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 BCL6BQ8N143 479 aaPredicted RBP8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 MBD6Q96DN6 1003 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 DYNLRB1Q9NP97 96 aa8.93□□□□□ -0.98
CLSTN3-207ENST00000537408 ATG2AQ2TAZ0 1938 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 SCGB2A1O75556 95 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 ZBTB34Q8NCN2 500 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 OR8A1Q8NGG7 326 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 FOXB1Q99853 325 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 ABCA4P78363 2273 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 ERVK-16P61578 105 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 IGFL3Q6UXB1 125 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 Q6ZUT4 128 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 FAM231DQ6ZW35 169 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 TMEM116Q8NCL8 245 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 AP5S1Q9NUS5 200 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 IDI2-AS1Q9NZ38 188 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 TNRC6AQ8NDV7 1962 aaKnown RBP8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 VWC2LB2RUY7 222 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 CSN3P07498 182 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 ERVK11-1P61568 191 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 EFNB3Q15768 340 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 GTSF1Q8WW33 167 aa8.92□□□□□ -0.98
CLSTN3-207ENST00000537408 NHP2Q9NX24 153 aaKnown RBP8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms