RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 TRAV2A0A0B4J234 112 aa8.9□□□□□ -0.98
CLIP1-209ENST00000537178 SFTA2Q6UW10 78 aa8.9□□□□□ -0.98
CLIP1-209ENST00000537178 ORAOV1Q8WV07 137 aa8.9□□□□□ -0.98
CLIP1-209ENST00000537178 CHCHD2Q9Y6H1 151 aaPredicted RBP8.9□□□□□ -0.98
CLIP1-209ENST00000537178 C5orf42Q9H799 3197 aa8.9□□□□□ -0.99
CLIP1-209ENST00000537178 YPEL1O60688 119 aa8.9□□□□□ -0.99
CLIP1-209ENST00000537178 RFPL3SP0C7P2 107 aa8.9□□□□□ -0.99
CLIP1-209ENST00000537178 CD28P10747 220 aa8.9□□□□□ -0.99
CLIP1-209ENST00000537178 BSPH1Q075Z2 132 aa8.9□□□□□ -0.99
CLIP1-209ENST00000537178 YPEL2Q96QA6 119 aa8.9□□□□□ -0.99
CLIP1-209ENST00000537178 RNF222A6NCQ9 220 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 MS4A6AQ9H2W1 248 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 PSG8Q9UQ74 426 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 VCANP13611 3396 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 TRBV6-7A0A0A0MS04 114 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 TRAV8-4A0A0B4J246 113 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 IQCF6A8MYZ5 107 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 RAMP1O60894 148 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 ZNF688P0C7X2 276 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 TDGF1P3P51864 188 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 GFI1BQ5VTD9 330 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 RNASE7Q9H1E1 156 aaKnown RBP8.89□□□□□ -0.99
CLIP1-209ENST00000537178 TMEM190Q8WZ59 177 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 ZNF479Q96JC4 524 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 SIGMAR1Q99720 223 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 VGLL1Q99990 258 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 CHCHD5Q9BSY4 110 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 CFHR5Q9BXR6 569 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 COLQQ9Y215 455 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-209ENST00000537178 A0A1W2PR77 199 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 F2Z2F3 143 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 SEC11AP67812 179 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 SMPXQ9UHP9 88 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 NOTCH3Q9UM47 2321 aa8.89□□□□□ -0.99
CLIP1-209ENST00000537178 TRAV14DV4A0A0A6YYC5 116 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 A0A0G2JK05 382 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 C15orf61A6NNL5 157 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 FBLN7Q53RD9 439 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 S100A7L2Q5SY68 101 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 SPRED2Q7Z698 418 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 DPH3P1Q9H4G8 78 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 JPT2Q9H910 190 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 CRIPAKQ8N1N5 446 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 IFI27L1Q96BM0 104 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 FNDC4Q9H6D8 234 aaPredicted RBP8.88□□□□□ -0.99
CLIP1-209ENST00000537178 CHTOPQ9Y3Y2 248 aaKnown RBP8.88□□□□□ -0.99
CLIP1-209ENST00000537178 TCRBV4S1A1TA0A5B7 111 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 CTSBP07858 339 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 GTF3AQ92664 365 aaKnown RBP8.88□□□□□ -0.99
CLIP1-209ENST00000537178 ERG28Q9UKR5 140 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 DENND4AQ7Z401 1863 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 HSD52Q0P140 79 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 SSC4DQ8WTU2 575 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 SIGLEC12Q96PQ1 595 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 DOCK10Q96BY6 2186 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 CHD7Q9P2D1 2997 aa8.88□□□□□ -0.99
CLIP1-209ENST00000537178 A0A1W2PRX2 142 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 SHISA3A0PJX4 238 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 OVOL1O14753 267 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 IGKCP01834 107 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 LINC00271P0C7V0 271 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 C1QTNF9P0C862 333 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 ZNF883P0CG24 379 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 RHOGP84095 191 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 Q5PR19 223 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 CHCHD1Q96BP2 118 aaKnown RBP8.87□□□□□ -0.99
CLIP1-209ENST00000537178 CST9LQ9H4G1 147 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 ADARB2-AS1A8MUL3 147 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 PRR32B1ATL7 298 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 M0R2P5 195 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 TIAF1O95411 115 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 GNG5P63218 68 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 COLCA1Q6ZS62 124 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 C8orf46Q8TAG6 207 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 GLMPQ8WWB7 406 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 TMEM133Q9H2Q1 129 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 SAA2-SAA4A0A096LPE2 208 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 CELA3AP09093 270 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 SAA2P0DJI9 122 aaPredicted RBP8.87□□□□□ -0.99
CLIP1-209ENST00000537178 VDAC2P45880 294 aaPredicted RBP8.87□□□□□ -0.99
CLIP1-209ENST00000537178 LINC00158P58513 81 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 GNB1LQ9BYB4 327 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 TMEM238C9JI98 176 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 NAPSAO96009 420 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 CCL3L1P16619 93 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 ADMP35318 185 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 ATP5L2Q7Z4Y8 100 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 A0A087WX48 190 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 A0A1B0GTI1 187 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 UMODP07911 640 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 OR9G9P0C7N8 305 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 CMC4P56277 68 aaPredicted RBP8.87□□□□□ -0.99
CLIP1-209ENST00000537178 GAGE2BQ13066 116 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 GAGE2EQ4V326 116 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 FBLN5Q9UBX5 448 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 GAGE2DQ9UEU5 116 aa8.87□□□□□ -0.99
CLIP1-209ENST00000537178 ARHGEF17Q96PE2 2063 aaPredicted RBP8.86□□□□□ -0.99
CLIP1-209ENST00000537178 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.86□□□□□ -0.99
CLIP1-209ENST00000537178 A0A1W2PRS3 328 aa8.86□□□□□ -0.99
CLIP1-209ENST00000537178 GAGE13Q4V321 117 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms