RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 TCRBV4S1A1TA0A5B7 111 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 ZNF840PA6NDX5 716 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 FAM90A10PA6NDY2 464 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 FAM90A20PA6NIJ5 464 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 FAM90A7PA6NKC0 464 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 FAM90A22PA8MWA6 464 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 A8MWL6 223 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 FAM90A12PA8MX19 464 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 FAM90A5PA8MXJ8 464 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 FAM90A23PA8MXZ1 464 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 C9JAW5 83 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 H3BML4 177 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 NDUFS7O75251 213 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 DHRS3O75911 302 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 RBP4P02753 201 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 ORM1P02763 201 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 FAM90A15PP0C7V4 464 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 FAM90A13PP0C7W8 464 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 FAM90A14PP0C7W9 464 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 FAM90A24PP0C7X0 464 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 ORM2P19652 201 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 FXYD2P54710 66 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 RPL30P62888 115 aaKnown RBP4.74□□□□□ -1.65
CD44-225ENST00000527326 TNFAIP6P98066 277 aaPredicted RBP4.74□□□□□ -1.65
CD44-225ENST00000527326 TFF3Q07654 80 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 FOXE3Q13461 319 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 FHL3Q13643 280 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 HES1Q14469 280 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 C3AR1Q16581 482 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 TBC1D28Q2M2D7 210 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 MBNL2Q5VZF2 373 aaKnown RBP4.74□□□□□ -1.65
CD44-225ENST00000527326 CRIP3Q6Q6R5 217 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 DGAT2L6Q6ZPD8 337 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 RBPMS2Q6ZRY4 209 aaKnown RBP4.74□□□□□ -1.65
CD44-225ENST00000527326 Q6ZSR3 168 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 TMEM219Q86XT9 240 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 ZNF808Q8N4W9 903 aaPredicted RBP4.74□□□□□ -1.65
CD44-225ENST00000527326 STPG3Q8N7X2 389 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 ZNRF2Q8NHG8 242 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 KIR2DL5BQ8NHK3 375 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 WFDC5Q8TCV5 224 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 RASL10AQ92737 203 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 CYYR1Q96J86 154 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 C18orf15Q96N68 181 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 LINC01587Q99440 93 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 HSD17B10Q99714 261 aaKnown RBP4.74□□□□□ -1.65
CD44-225ENST00000527326 CHAC1Q9BUX1 264 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 RNASE7Q9H1E1 156 aaKnown RBP4.74□□□□□ -1.65
CD44-225ENST00000527326 FBXL15Q9H469 300 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 TMEM167BQ9NRX6 74 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 IDI2-AS1Q9NZ38 188 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 SLC25A10Q9UBX3 287 aaPredicted RBP4.74□□□□□ -1.65
CD44-225ENST00000527326 HIGD1AQ9Y241 93 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 PRUNE2Q8WUY3 3088 aa4.74□□□□□ -1.65
CD44-225ENST00000527326 DOCK9Q9BZ29 2069 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 TRBV20-1A0A075B6N2 111 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 SH2D7A6NKC9 451 aaPredicted RBP4.73□□□□□ -1.65
CD44-225ENST00000527326 PMS2P5A8MQ11 134 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 LINC01619G3V211 115 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 FOXS1O43638 330 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 PRKNO60260 465 aaPredicted RBP4.73□□□□□ -1.65
CD44-225ENST00000527326 MT-CO3P00414 261 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 IGLV3-1P01715 115 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 SP1P08047 785 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 RPL7P18124 248 aaKnown RBP4.73□□□□□ -1.65
CD44-225ENST00000527326 EMP1P54849 157 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 FXYD3Q14802 87 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 EFNB3Q15768 340 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 C12orf74Q32Q52 190 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 GDF5OSQ5U4N7 250 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 ZNF474Q6S9Z5 364 aaPredicted RBP4.73□□□□□ -1.65
CD44-225ENST00000527326 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.73□□□□□ -1.65
CD44-225ENST00000527326 FAM19A5Q7Z5A7 132 aaPredicted RBP4.73□□□□□ -1.65
CD44-225ENST00000527326 NFE4Q86UQ8 179 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 SBSPONQ8IVN8 264 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 RPRMLQ8N4K4 120 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 OR13A1Q8NGR1 328 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 IGF2BP2-AS1Q96M15 143 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 SRSF8Q9BRL6 282 aaKnown RBP4.73□□□□□ -1.65
CD44-225ENST00000527326 OBP2BQ9NPH6 170 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 CCL28Q9NRJ3 127 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 NHP2Q9NX24 153 aaKnown RBP4.73□□□□□ -1.65
CD44-225ENST00000527326 ALKBH4Q9NXW9 302 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 DLL3Q9NYJ7 618 aa4.73□□□□□ -1.65
CD44-225ENST00000527326 LAMA2P24043 3122 aaKnown RBP4.73□□□□□ -1.65
CD44-225ENST00000527326 NCKAP5O14513 1909 aa4.72□□□□□ -1.65
CD44-225ENST00000527326 C17orf102A2RUQ5 167 aa4.72□□□□□ -1.65
CD44-225ENST00000527326 K7ERJ3 54 aa4.72□□□□□ -1.65
CD44-225ENST00000527326 NPFFO15130 113 aa4.72□□□□□ -1.65
CD44-225ENST00000527326 TNFSF14O43557 240 aa4.72□□□□□ -1.65
CD44-225ENST00000527326 OR2H2O95918 312 aa4.72□□□□□ -1.65
CD44-225ENST00000527326 STATHP02808 62 aa4.72□□□□□ -1.65
CD44-225ENST00000527326 CT62P0C5K7 136 aa4.72□□□□□ -1.65
CD44-225ENST00000527326 C8orf88P0DMB2 117 aa4.72□□□□□ -1.65
CD44-225ENST00000527326 LINC00694P0DN24 101 aa4.72□□□□□ -1.65
CD44-225ENST00000527326 CYBAP13498 195 aa4.72□□□□□ -1.65
CD44-225ENST00000527326 RPS16P62249 146 aaKnown RBP4.72□□□□□ -1.65
CD44-225ENST00000527326 EDDM3AQ14507 147 aa4.72□□□□□ -1.65
CD44-225ENST00000527326 C3orf36Q3SXR2 165 aa4.72□□□□□ -1.65
CD44-225ENST00000527326 SPRNQ5BIV9 151 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms