RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 IGHV2-5P01817 119 aa9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 C1orf122Q6ZSJ8 110 aa9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 PEBP1P30086 187 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 PRIMA1Q86XR5 153 aa9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 C1orf210Q8IVY1 113 aa9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 SPATA25Q9BR10 227 aa9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 RPUSD1Q9UJJ7 312 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 MYO5AQ9Y4I1 1855 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 MAST2Q6P0Q8 1798 aa9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 SHROOM3Q8TF72 1996 aa9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 PFN1P07737 140 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 LYZL1Q6UWQ5 148 aa9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 CHCHD5Q9BSY4 110 aa9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 SCN4AP35499 1836 aa9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 ASCC3Q8N3C0 2202 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 ATP5G1P05496 136 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 PDLIM4P50479 330 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 CRYBA2P53672 197 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 NEU4Q8WWR8 484 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 RFNGQ9Y644 331 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 SPINK2P20155 84 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 CSRP3P50461 194 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 ZNF138P52744 262 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 C6orf226Q5I0X4 101 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 Q6ZT83 130 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 RPP25LQ8N5L8 163 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 ZIC4Q8N9L1 334 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 NABP1Q96AH0 204 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 IGHV5-10-1A0A0J9YXX1 117 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 PDE6HQ13956 83 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 C1QL2Q7Z5L3 287 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 C15orf53Q8NAA6 179 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 CSTL1Q9H114 145 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 IGHV1-45A0A0A0MS14 117 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 TRGV4A0A0C4DH28 118 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 H3BQ85 93 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 ZNF876PQ49A33 203 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 IL17RELQ6ZVW7 336 aa9.32□□□□□ -0.92
LIMCH1-217ENST00000512946 IGKV3-20P01619 116 aa9.31□□□□□ -0.92
LIMCH1-217ENST00000512946 PYYP10082 97 aa9.31□□□□□ -0.92
LIMCH1-217ENST00000512946 BVES-AS1Q5T3Y7 98 aa9.31□□□□□ -0.92
LIMCH1-217ENST00000512946 IGHV3-48P01763 117 aa9.31□□□□□ -0.92
LIMCH1-217ENST00000512946 ZNF497Q6ZNH5 498 aa9.31□□□□□ -0.92
LIMCH1-217ENST00000512946 DCTN5Q9BTE1 182 aa9.31□□□□□ -0.92
LIMCH1-217ENST00000512946 ZNF114Q8NC26 417 aa9.31□□□□□ -0.92
LIMCH1-217ENST00000512946 TTC3P53804 2025 aa9.31□□□□□ -0.92
LIMCH1-217ENST00000512946 TRAV13-2A0A0B4J235 113 aa9.31□□□□□ -0.92
LIMCH1-217ENST00000512946 IGKV3D-20A0A0C4DH25 116 aa9.31□□□□□ -0.92
LIMCH1-217ENST00000512946 C2CD4DB7Z1M9 353 aa9.31□□□□□ -0.92
LIMCH1-217ENST00000512946 SPSB3Q6PJ21 355 aa9.31□□□□□ -0.92
LIMCH1-217ENST00000512946 ZNF784Q8NCA9 323 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-217ENST00000512946 ERCC8Q13216 396 aa9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 LINC00114Q6XXX2 140 aa9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 HAPLN4Q86UW8 402 aa9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 ITLN2Q8WWU7 325 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 MESP1Q9BRJ9 268 aa9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 GATA2P23769 480 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 TRIP6Q15654 476 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 SIGLEC12Q96PQ1 595 aa9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 CHD4Q14839 1912 aa9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 UBR2Q8IWV8 1755 aa9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 C18orf32Q8TCD1 76 aa9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 INS-IGF2F8WCM5 200 aa9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 INSP01308 110 aa9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 IGFBP6P24592 240 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 NMSQ5H8A3 153 aa9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 LEAP2Q969E1 77 aa9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 MRPS18CQ9Y3D5 142 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-217ENST00000512946 CABIN1Q9Y6J0 2220 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 NPYP01303 97 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 CFPP27918 469 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 RP1P56715 2156 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 A0A087WX48 190 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 FGF6P10767 208 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 APOBEC3AP31941 199 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 NPC2P61916 151 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 HAMPP81172 84 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 MORN2Q502X0 79 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 CLEC19AQ6UXS0 136 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 FAM231DQ6ZW35 169 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 DEPPQ9NTK1 212 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 RP1L1Q8IWN7 2480 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 EP400Q96L91 3159 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 OOSP1A8MZH6 123 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 RHODO00212 210 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 C10orf91Q5T1B1 145 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 STHQ8IWL8 128 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 Q8N8P6 123 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 DSCR8Q96T75 97 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 SPANXB1Q9NS25 103 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 ASXL3Q9C0F0 2248 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 MYO9BQ13459 2157 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 IGKV1D-33P01593 117 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 IGKV1-33P01594 117 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 TCF15Q12870 199 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 Q6ZS52 159 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 CEND1Q8N111 149 aa9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 SRSF8Q9BRL6 282 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-217ENST00000512946 IGHV2-70DA0A0C4DH43 119 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms