RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 FNDC9Q8TBE3 224 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 PLPPR1Q8TBJ4 325 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 ARPC1AQ92747 370 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 TMEM54Q969K7 222 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 TIMD4Q96H15 378 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 SDF2Q99470 211 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 ATP5SQ99766 215 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 TSSK6Q9BXA6 273 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 ST20Q9HBF5 79 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 NPVFQ9HCQ7 196 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 ACP6Q9NPH0 428 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 CA10Q9NS85 328 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 COMMD9Q9P000 198 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 MARCOQ9UEW3 520 aaPredicted RBP1.25□□□□□ -2.21
NUP54-208ENST00000508604 TRMT112Q9UI30 125 aaKnown RBP1.25□□□□□ -2.21
NUP54-208ENST00000508604 AK3Q9UIJ7 227 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 ASF1AQ9Y294 204 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 ZNF443Q9Y2A4 671 aaPredicted RBP1.25□□□□□ -2.21
NUP54-208ENST00000508604 RCL1Q9Y2P8 373 aaKnown RBP1.25□□□□□ -2.21
NUP54-208ENST00000508604 POLR1DQ9Y2S0 133 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 WASHC3Q9Y3C0 194 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 HEBP2Q9Y5Z4 205 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 ANK1P16157 1881 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 TRPM7Q96QT4 1865 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 SCN1AP35498 2009 aa1.25□□□□□ -2.21
NUP54-208ENST00000508604 MED1Q15648 1581 aaPredicted RBP1.24□□□□□ -2.21
NUP54-208ENST00000508604 SBF2Q86WG5 1849 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 PTPRMP28827 1452 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 C4AP0C0L4 1744 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 C4BP0C0L5 1744 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 PKD1L3Q7Z443 1732 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 ZFC3H1O60293 1989 aaKnown RBP1.24□□□□□ -2.21
NUP54-208ENST00000508604 CICQ96RK0 1608 aaPredicted RBP1.24□□□□□ -2.21
NUP54-208ENST00000508604 LAMB2P55268 1798 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 A0A096LNJ9 63 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 TRGV10A0A0A0MS01 117 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 TRBV6-7A0A0A0MS04 114 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 IGHV7-81A0A0B4J1V7 117 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 TRAV5A0A0B4J249 113 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 SMIM28A0A1B0GU29 152 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 ODAMA1E959 279 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 TSPAN11A1L157 253 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 RBFOX3A6NFN3 312 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 TLCD2A6NGC4 264 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 OR2T8A6NH00 312 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 C17orf112F2Z3M2 114 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 GABARAPH6UMI1 98 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 CLDN11O75508 207 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 ATP5LO75964 103 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 NDUFB6O95139 128 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 NDUFC2O95298 119 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 CA2P00918 260 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 HRASP01112 189 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 KRASP01116 189 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 GYPAP02724 150 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 CATP04040 527 aaKnown RBP1.24□□□□□ -2.21
NUP54-208ENST00000508604 ATP5G1P05496 136 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 CXCL1P09341 107 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 LINC00869P0C866 280 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 PGA4P0DJD7 388 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 PGA5P0DJD9 388 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 LINC00694P0DN24 101 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 RNASE2P10153 161 aaKnown RBP1.24□□□□□ -2.21
NUP54-208ENST00000508604 FAUP35544 74 aaKnown RBP1.24□□□□□ -2.21
NUP54-208ENST00000508604 MAGEA5P43359 124 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 ATP5G3P48201 142 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 REG1BP48304 166 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 HINT1P49773 126 aaPredicted RBP1.24□□□□□ -2.21
NUP54-208ENST00000508604 ZNF83P51522 516 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 SSR4P51571 173 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 POLR2JP52435 117 aaKnown RBP1.24□□□□□ -2.21
NUP54-208ENST00000508604 DLX1P56177 255 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 OSTNP61366 133 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 RPS14P62263 151 aaKnown RBP1.24□□□□□ -2.21
NUP54-208ENST00000508604 ATP5G2Q06055 141 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 MEF2CQ06413 473 aaPredicted RBP1.24□□□□□ -2.21
NUP54-208ENST00000508604 LAMTOR4Q0VGL1 99 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 RAB40BQ12829 278 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 CATR1Q13166 79 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 HES1Q14469 280 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 GUSBP1Q15486 140 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 SPATA45Q537H7 98 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 TTC32Q5I0X7 151 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 PAGE3Q5JUK9 113 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 UBE2NLQ5JXB2 153 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 VAX1Q5SQQ9 334 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 BVES-AS1Q5T3Y7 98 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 ZNF684Q5T5D7 378 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 AADACL3Q5VUY0 350 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 MORN3Q6PF18 240 aaPredicted RBP1.24□□□□□ -2.21
NUP54-208ENST00000508604 RASL11AQ6T310 242 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 AMTNQ6UX39 209 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 BRD3OSQ6XYD6 125 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 SLC25A48Q6ZT89 311 aaKnown RBP1.24□□□□□ -2.21
NUP54-208ENST00000508604 Q6ZUT4 128 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 CMC1Q7Z7K0 106 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 HMGN2P46Q86SG4 172 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 ZNF709Q8N972 641 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 ZIC4Q8N9L1 334 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 OR10P1Q8NGE3 313 aa1.24□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms