RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 A0A1W2PPQ1 181 aa16.79■□□□□ 0.28
CCDC88B-208ENST00000492980 HNF1AP20823 631 aa16.79■□□□□ 0.28
CCDC88B-208ENST00000492980 NDUFA6P56556 154 aa16.79■□□□□ 0.28
CCDC88B-208ENST00000492980 UBE2L3P68036 154 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-208ENST00000492980 CLEC12BQ2HXU8 276 aa16.79■□□□□ 0.28
CCDC88B-208ENST00000492980 MDFIC2A0A1B0GVS7 189 aa16.79■□□□□ 0.28
CCDC88B-208ENST00000492980 TRGC1P0CF51 173 aa16.79■□□□□ 0.28
CCDC88B-208ENST00000492980 CRYBB3P26998 211 aa16.79■□□□□ 0.28
CCDC88B-208ENST00000492980 OR2T10Q8NGZ9 312 aa16.79■□□□□ 0.28
CCDC88B-208ENST00000492980 C12orf57Q99622 126 aa16.79■□□□□ 0.28
CCDC88B-208ENST00000492980 LY96Q9Y6Y9 160 aa16.79■□□□□ 0.28
CCDC88B-208ENST00000492980 CNIH1O95406 144 aa16.78■□□□□ 0.28
CCDC88B-208ENST00000492980 MEOX2P50222 304 aa16.78■□□□□ 0.28
CCDC88B-208ENST00000492980 SSX2Q16385 188 aa16.78■□□□□ 0.28
CCDC88B-208ENST00000492980 DYNAPQ8N1N2 210 aa16.78■□□□□ 0.28
CCDC88B-208ENST00000492980 SIRPDQ9H106 197 aa16.78■□□□□ 0.28
CCDC88B-208ENST00000492980 K7EN84 100 aa16.78■□□□□ 0.28
CCDC88B-208ENST00000492980 S100A8P05109 93 aa16.78■□□□□ 0.28
CCDC88B-208ENST00000492980 PYYP10082 97 aa16.78■□□□□ 0.28
CCDC88B-208ENST00000492980 HOXA5P20719 270 aa16.78■□□□□ 0.28
CCDC88B-208ENST00000492980 LCN2P80188 198 aa16.78■□□□□ 0.28
CCDC88B-208ENST00000492980 TEX38Q6PEX7 206 aa16.78■□□□□ 0.28
CCDC88B-208ENST00000492980 KCNIP4Q6PIL6 250 aa16.78■□□□□ 0.28
CCDC88B-208ENST00000492980 PAXXQ9BUH6 204 aa16.78■□□□□ 0.28
CCDC88B-208ENST00000492980 ELOA3CA0A087WX78 387 aaPredicted RBP16.77■□□□□ 0.28
CCDC88B-208ENST00000492980 SUMO1P63165 101 aaKnown RBP16.77■□□□□ 0.28
CCDC88B-208ENST00000492980 LINC00305Q7Z4B0 112 aa16.77■□□□□ 0.28
CCDC88B-208ENST00000492980 IMMP2LQ96T52 175 aa16.77■□□□□ 0.28
CCDC88B-208ENST00000492980 PPP5D1E7EU14 171 aa16.76■□□□□ 0.27
CCDC88B-208ENST00000492980 I3L2K1 104 aa16.76■□□□□ 0.27
CCDC88B-208ENST00000492980 HES1Q14469 280 aa16.76■□□□□ 0.27
CCDC88B-208ENST00000492980 CCDC144NLQ6NUI1 221 aa16.76■□□□□ 0.27
CCDC88B-208ENST00000492980 WNT10AQ9GZT5 417 aa16.76■□□□□ 0.27
CCDC88B-208ENST00000492980 IGHV2-70DA0A0C4DH43 119 aa16.76■□□□□ 0.27
CCDC88B-208ENST00000492980 OOSP1A8MZH6 123 aa16.76■□□□□ 0.27
CCDC88B-208ENST00000492980 ORM2P19652 201 aa16.76■□□□□ 0.27
CCDC88B-208ENST00000492980 MINOS1Q5TGZ0 78 aa16.76■□□□□ 0.27
CCDC88B-208ENST00000492980 OR1B1Q8NGR6 318 aa16.76■□□□□ 0.27
CCDC88B-208ENST00000492980 OR51M1Q9H341 326 aa16.76■□□□□ 0.27
CCDC88B-208ENST00000492980 GSX1Q9H4S2 264 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-208ENST00000492980 MINOS1-NBL1R4GNA1 71 aa16.76■□□□□ 0.27
CCDC88B-208ENST00000492980 HELTA6NFD8 242 aa16.75■□□□□ 0.27
CCDC88B-208ENST00000492980 OVOL3O00110 214 aa16.75■□□□□ 0.27
CCDC88B-208ENST00000492980 TYMSP04818 313 aa16.75■□□□□ 0.27
CCDC88B-208ENST00000492980 FAM3BP58499 235 aaPredicted RBP16.75■□□□□ 0.27
CCDC88B-208ENST00000492980 C5orf64Q2M2E5 130 aa16.75■□□□□ 0.27
CCDC88B-208ENST00000492980 CENPWQ5EE01 88 aa16.75■□□□□ 0.27
CCDC88B-208ENST00000492980 OR10G8Q8NGN5 311 aa16.75■□□□□ 0.27
CCDC88B-208ENST00000492980 FXYD5Q96DB9 178 aa16.75■□□□□ 0.27
CCDC88B-208ENST00000492980 PERPQ96FX8 193 aa16.75■□□□□ 0.27
CCDC88B-208ENST00000492980 BPESC1Q9GZL8 116 aa16.75■□□□□ 0.27
CCDC88B-208ENST00000492980 FXYD3Q14802 87 aa16.75■□□□□ 0.27
CCDC88B-208ENST00000492980 CDX1P47902 265 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-208ENST00000492980 LMO4P61968 165 aa16.74■□□□□ 0.27
CCDC88B-208ENST00000492980 FOXL1Q12952 345 aa16.74■□□□□ 0.27
CCDC88B-208ENST00000492980 IGLC1P0CG04 106 aa16.73■□□□□ 0.27
CCDC88B-208ENST00000492980 GNG4P50150 75 aa16.73■□□□□ 0.27
CCDC88B-208ENST00000492980 Q8N6K4 173 aa16.73■□□□□ 0.27
CCDC88B-208ENST00000492980 TCEAL7Q9BRU2 100 aa16.73■□□□□ 0.27
CCDC88B-208ENST00000492980 FAM103A1Q9BTL3 118 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-208ENST00000492980 IFITM10A6NMD0 228 aa16.73■□□□□ 0.27
CCDC88B-208ENST00000492980 PLP1P60201 277 aa16.73■□□□□ 0.27
CCDC88B-208ENST00000492980 HYPMO75409 117 aa16.72■□□□□ 0.27
CCDC88B-208ENST00000492980 TOX4O94842 621 aa16.72■□□□□ 0.27
CCDC88B-208ENST00000492980 SGMS2Q8NHU3 365 aa16.72■□□□□ 0.27
CCDC88B-208ENST00000492980 K7EIM0 57 aa16.72■□□□□ 0.27
CCDC88B-208ENST00000492980 SMIM6P0DI80 62 aa16.72■□□□□ 0.27
CCDC88B-208ENST00000492980 EBI3Q14213 229 aa16.72■□□□□ 0.27
CCDC88B-208ENST00000492980 TBX15Q96SF7 602 aa16.72■□□□□ 0.27
CCDC88B-208ENST00000492980 ZNF329Q86UD4 541 aa16.71■□□□□ 0.27
CCDC88B-208ENST00000492980 STXBP6Q8NFX7 210 aa16.71■□□□□ 0.27
CCDC88B-208ENST00000492980 IGHV4-39P01824 125 aa16.7■□□□□ 0.26
CCDC88B-208ENST00000492980 ACTL10Q5JWF8 245 aa16.7■□□□□ 0.26
CCDC88B-208ENST00000492980 OR1L6Q8NGR2 347 aa16.7■□□□□ 0.26
CCDC88B-208ENST00000492980 IGF2BP2-AS1Q96M15 143 aa16.7■□□□□ 0.26
CCDC88B-208ENST00000492980 TBL2Q9Y4P3 447 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-208ENST00000492980 PSG1P11464 419 aa16.7■□□□□ 0.26
CCDC88B-208ENST00000492980 OR5I1Q13606 314 aa16.7■□□□□ 0.26
CCDC88B-208ENST00000492980 TIGITQ495A1 244 aa16.7■□□□□ 0.26
CCDC88B-208ENST00000492980 BTF3L4Q96K17 158 aa16.7■□□□□ 0.26
CCDC88B-208ENST00000492980 S100A9P06702 114 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-208ENST00000492980 UBE2E1P51965 193 aa16.69■□□□□ 0.26
CCDC88B-208ENST00000492980 CX3CL1P78423 397 aa16.69■□□□□ 0.26
CCDC88B-208ENST00000492980 GFI1BQ5VTD9 330 aa16.69■□□□□ 0.26
CCDC88B-208ENST00000492980 ZNF562Q6V9R5 426 aa16.69■□□□□ 0.26
CCDC88B-208ENST00000492980 A0A0U1RQK1 487 aa16.69■□□□□ 0.26
CCDC88B-208ENST00000492980 ZNF320A2RRD8 509 aa16.69■□□□□ 0.26
CCDC88B-208ENST00000492980 NCBP2LA6PVI3 153 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-208ENST00000492980 SLC17A3O00476 420 aa16.69■□□□□ 0.26
CCDC88B-208ENST00000492980 IGLV2-8P01709 118 aa16.69■□□□□ 0.26
CCDC88B-208ENST00000492980 MYCNOSP40205 109 aa16.69■□□□□ 0.26
CCDC88B-208ENST00000492980 ASPHD1Q5U4P2 390 aa16.69■□□□□ 0.26
CCDC88B-208ENST00000492980 ARPC1AQ92747 370 aa16.69■□□□□ 0.26
CCDC88B-208ENST00000492980 AJUBAQ96IF1 538 aa16.69■□□□□ 0.26
CCDC88B-208ENST00000492980 RASL11BQ9BPW5 248 aa16.69■□□□□ 0.26
CCDC88B-208ENST00000492980 IL36BQ9NZH7 164 aa16.69■□□□□ 0.26
CCDC88B-208ENST00000492980 IGKV1-17P01599 117 aa16.68■□□□□ 0.26
CCDC88B-208ENST00000492980 SNRPCP09234 159 aaKnown RBP16.68■□□□□ 0.26
CCDC88B-208ENST00000492980 TMEM11P17152 192 aa16.68■□□□□ 0.26
CCDC88B-208ENST00000492980 NDPQ00604 133 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms