RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 NCOA6Q14686 2063 aaPredicted RBP0.55□□□□□ -2.32
SCN1A-206ENST00000491429 MED12LQ86YW9 2145 aa0.55□□□□□ -2.32
SCN1A-206ENST00000491429 FBN2P35556 2912 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 hCG_1818297A0A087WSY0 165 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 A0A087WUJ7 227 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 A8MT66 165 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 YPEL3P61236 119 aaPredicted RBP0.54□□□□□ -2.32
SCN1A-206ENST00000491429 RHOBP62745 196 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 AESQ08117 197 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 C1orf137Q5JT78 98 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 BRMS1LQ5PSV4 323 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 OTUD6BQ8N6M0 293 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 C3orf56Q8N813 242 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 GDPD1Q8N9F7 314 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 OR8D4Q8NGM9 314 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 WFDC5Q8TCV5 224 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 CT55Q8WUE5 264 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 C6orf62Q9GZU0 229 aaPredicted RBP0.54□□□□□ -2.32
SCN1A-206ENST00000491429 RNASE7Q9H1E1 156 aaKnown RBP0.54□□□□□ -2.32
SCN1A-206ENST00000491429 NHP2Q9NX24 153 aaKnown RBP0.54□□□□□ -2.32
SCN1A-206ENST00000491429 UBAP1Q9NZ09 502 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 EPDR1Q9UM22 224 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 HS3ST2Q9Y278 367 aa0.54□□□□□ -2.32
SCN1A-206ENST00000491429 TNRC6BQ9UPQ9 1833 aaKnown RBP0.53□□□□□ -2.32
SCN1A-206ENST00000491429 A0A087X0T9 212 aa0.53□□□□□ -2.32
SCN1A-206ENST00000491429 hADV38S2A0JD32 116 aa0.53□□□□□ -2.32
SCN1A-206ENST00000491429 ZNF736B4DX44 427 aaPredicted RBP0.53□□□□□ -2.32
SCN1A-206ENST00000491429 CLDN25C9JDP6 229 aa0.53□□□□□ -2.32
SCN1A-206ENST00000491429 M0R2N4 97 aa0.53□□□□□ -2.32
SCN1A-206ENST00000491429 KPNA3O00505 521 aaPredicted RBP0.53□□□□□ -2.32
SCN1A-206ENST00000491429 RPP14O95059 124 aaKnown RBP0.53□□□□□ -2.32
SCN1A-206ENST00000491429 DNAL4O96015 105 aa0.53□□□□□ -2.32
SCN1A-206ENST00000491429 CEBPGP53567 150 aa0.53□□□□□ -2.32
SCN1A-206ENST00000491429 ESRGQ1W209 222 aa0.53□□□□□ -2.32
SCN1A-206ENST00000491429 C12orf74Q32Q52 190 aa0.53□□□□□ -2.32
SCN1A-206ENST00000491429 LINC00301Q8NCQ3 95 aa0.53□□□□□ -2.32
SCN1A-206ENST00000491429 SLC25A40Q8TBP6 338 aa0.53□□□□□ -2.32
SCN1A-206ENST00000491429 BORCS5Q969J3 196 aa0.53□□□□□ -2.32
SCN1A-206ENST00000491429 BORCS7Q96B45 105 aa0.53□□□□□ -2.32
SCN1A-206ENST00000491429 HIST1H2BLQ99880 126 aa0.53□□□□□ -2.32
SCN1A-206ENST00000491429 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.53□□□□□ -2.32
SCN1A-206ENST00000491429 UQCC1Q9NVA1 299 aa0.53□□□□□ -2.32
SCN1A-206ENST00000491429 PRELID3BQ9Y3B1 194 aa0.53□□□□□ -2.32
SCN1A-206ENST00000491429 EXPH5Q8NEV8 1989 aa0.52□□□□□ -2.33
SCN1A-206ENST00000491429 C7orf71A4D174 169 aa0.52□□□□□ -2.33
SCN1A-206ENST00000491429 SMIM9A6NGZ8 99 aa0.52□□□□□ -2.33
SCN1A-206ENST00000491429 INE1O15225 51 aa0.52□□□□□ -2.33
SCN1A-206ENST00000491429 ZNF682O95780 498 aa0.52□□□□□ -2.33
SCN1A-206ENST00000491429 MPV17LQ2QL34 196 aa0.52□□□□□ -2.33
SCN1A-206ENST00000491429 IAH1Q2TAA2 248 aaPredicted RBP0.52□□□□□ -2.33
SCN1A-206ENST00000491429 SOSTDC1Q6X4U4 206 aa0.52□□□□□ -2.33
SCN1A-206ENST00000491429 OR6V1Q8N148 313 aa0.52□□□□□ -2.33
SCN1A-206ENST00000491429 OR8J2Q8NGG1 315 aa0.52□□□□□ -2.33
SCN1A-206ENST00000491429 PPP1R14BQ96C90 147 aa0.52□□□□□ -2.33
SCN1A-206ENST00000491429 ADAT3Q96EY9 351 aaPredicted RBP0.52□□□□□ -2.33
SCN1A-206ENST00000491429 AMELYQ99218 206 aa0.52□□□□□ -2.33
SCN1A-206ENST00000491429 FBXO5Q9UKT4 447 aa0.52□□□□□ -2.33
SCN1A-206ENST00000491429 NOSIPQ9Y314 301 aaKnown RBP0.52□□□□□ -2.33
SCN1A-206ENST00000491429 ZNF469Q96JG9 3925 aaPredicted RBP0.52□□□□□ -2.33
SCN1A-206ENST00000491429 LAMB4A4D0S4 1761 aa0.51□□□□□ -2.33
SCN1A-206ENST00000491429 CYB5BO43169 146 aa0.51□□□□□ -2.33
SCN1A-206ENST00000491429 PDE6DO43924 150 aa0.51□□□□□ -2.33
SCN1A-206ENST00000491429 TCRBP04435 133 aa0.51□□□□□ -2.33
SCN1A-206ENST00000491429 SERPINE1P05121 402 aa0.51□□□□□ -2.33
SCN1A-206ENST00000491429 PPIBP23284 216 aaKnown RBP0.51□□□□□ -2.33
SCN1A-206ENST00000491429 LSM6P62312 80 aaKnown RBP0.51□□□□□ -2.33
SCN1A-206ENST00000491429 RANP62826 216 aaKnown RBP0.51□□□□□ -2.33
SCN1A-206ENST00000491429 TSNQ15631 228 aaKnown RBP0.51□□□□□ -2.33
SCN1A-206ENST00000491429 SPRNQ5BIV9 151 aa0.51□□□□□ -2.33
SCN1A-206ENST00000491429 LCA10Q71F78 164 aa0.51□□□□□ -2.33
SCN1A-206ENST00000491429 C12orf45Q8N5I9 185 aaPredicted RBP0.51□□□□□ -2.33
SCN1A-206ENST00000491429 Q8N6K4 173 aa0.51□□□□□ -2.33
SCN1A-206ENST00000491429 OR2T10Q8NGZ9 312 aa0.51□□□□□ -2.33
SCN1A-206ENST00000491429 NEO1Q92859 1461 aa0.51□□□□□ -2.33
SCN1A-206ENST00000491429 C2orf50Q96LR7 162 aa0.51□□□□□ -2.33
SCN1A-206ENST00000491429 TRIM4Q9C037 500 aa0.51□□□□□ -2.33
SCN1A-206ENST00000491429 BCL2L10Q9HD36 194 aa0.51□□□□□ -2.33
SCN1A-206ENST00000491429 AHNAKQ09666 5890 aaKnown RBP0.51□□□□□ -2.33
SCN1A-206ENST00000491429 DOCK5Q9H7D0 1870 aa0.5□□□□□ -2.33
SCN1A-206ENST00000491429 MYO3BQ8WXR4 1341 aa0.5□□□□□ -2.33
SCN1A-206ENST00000491429 NCR3O14931 201 aa0.5□□□□□ -2.33
SCN1A-206ENST00000491429 GADD45GO95257 159 aa0.5□□□□□ -2.33
SCN1A-206ENST00000491429 C8GP07360 202 aa0.5□□□□□ -2.33
SCN1A-206ENST00000491429 ANP32AP39687 249 aaKnown RBP0.5□□□□□ -2.33
SCN1A-206ENST00000491429 EDDM3AQ14507 147 aa0.5□□□□□ -2.33
SCN1A-206ENST00000491429 Q6Q795 121 aa0.5□□□□□ -2.33
SCN1A-206ENST00000491429 OR51A2Q8NGJ7 313 aa0.5□□□□□ -2.33
SCN1A-206ENST00000491429 TEX47Q8TBZ9 253 aa0.5□□□□□ -2.33
SCN1A-206ENST00000491429 FAM172AQ8WUF8 416 aa0.5□□□□□ -2.33
SCN1A-206ENST00000491429 C4orf3Q8WVX3 66 aa0.5□□□□□ -2.33
SCN1A-206ENST00000491429 SLAMF6Q96DU3 332 aa0.5□□□□□ -2.33
SCN1A-206ENST00000491429 PARVGQ9HBI0 331 aa0.5□□□□□ -2.33
SCN1A-206ENST00000491429 TVP23BQ9NYZ1 205 aa0.5□□□□□ -2.33
SCN1A-206ENST00000491429 PKD1L2Q7Z442 2459 aa0.5□□□□□ -2.33
SCN1A-206ENST00000491429 CACNA1AO00555 2505 aa0.49□□□□□ -2.33
SCN1A-206ENST00000491429 MED1Q15648 1581 aaPredicted RBP0.49□□□□□ -2.33
SCN1A-206ENST00000491429 UBR4Q5T4S7 5183 aa0.49□□□□□ -2.33
SCN1A-206ENST00000491429 ZFYVE9O95405 1425 aa0.49□□□□□ -2.33
SCN1A-206ENST00000491429 CCL25O15444 150 aa0.49□□□□□ -2.33
SCN1A-206ENST00000491429 SRIP30626 198 aa0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms