RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 RPL5P46777 297 aaKnown RBP9.91□□□□□ -0.82
VARS-227ENST00000489979 HOXA1P49639 335 aaPredicted RBP9.91□□□□□ -0.82
VARS-227ENST00000489979 FXYD7P58549 80 aa9.91□□□□□ -0.82
VARS-227ENST00000489979 FAM222AQ5U5X8 452 aa9.91□□□□□ -0.82
VARS-227ENST00000489979 PDCD10Q9BUL8 212 aa9.91□□□□□ -0.82
VARS-227ENST00000489979 SEPSECSQ9HD40 501 aaKnown RBP9.91□□□□□ -0.82
VARS-227ENST00000489979 RFNGQ9Y644 331 aa9.91□□□□□ -0.82
VARS-227ENST00000489979 HLA-DRB4X5D2U9 266 aa9.91□□□□□ -0.82
VARS-227ENST00000489979 TRAV30A0A087WSZ9 112 aa9.9□□□□□ -0.82
VARS-227ENST00000489979 IGKV3-20P01619 116 aa9.9□□□□□ -0.82
VARS-227ENST00000489979 P0C879 139 aa9.9□□□□□ -0.82
VARS-227ENST00000489979 PRSS3P35030 304 aa9.9□□□□□ -0.82
VARS-227ENST00000489979 UCP3P55916 312 aa9.9□□□□□ -0.82
VARS-227ENST00000489979 UBE2NLQ5JXB2 153 aa9.9□□□□□ -0.82
VARS-227ENST00000489979 GDF5OSQ5U4N7 250 aa9.9□□□□□ -0.82
VARS-227ENST00000489979 TMEM88Q6PEY1 159 aa9.9□□□□□ -0.82
VARS-227ENST00000489979 Q8WTZ3 238 aa9.9□□□□□ -0.82
VARS-227ENST00000489979 ENY2Q9NPA8 101 aa9.9□□□□□ -0.82
VARS-227ENST00000489979 NRN1Q9NPD7 142 aa9.9□□□□□ -0.82
VARS-227ENST00000489979 TEX48A0A1B0GUV7 120 aa9.89□□□□□ -0.83
VARS-227ENST00000489979 IGLC1P0CG04 106 aa9.89□□□□□ -0.83
VARS-227ENST00000489979 AKR1C2P52895 323 aa9.89□□□□□ -0.83
VARS-227ENST00000489979 DEFB1P60022 68 aa9.89□□□□□ -0.83
VARS-227ENST00000489979 DHODHQ02127 395 aa9.89□□□□□ -0.83
VARS-227ENST00000489979 OR1S2Q8NGQ3 325 aa9.89□□□□□ -0.83
VARS-227ENST00000489979 YTHDF1Q9BYJ9 559 aaKnown RBP9.89□□□□□ -0.83
VARS-227ENST00000489979 TMEM127O75204 238 aa9.88□□□□□ -0.83
VARS-227ENST00000489979 NKX2-1P43699 371 aaPredicted RBP9.88□□□□□ -0.83
VARS-227ENST00000489979 OXA1LQ15070 435 aa9.88□□□□□ -0.83
VARS-227ENST00000489979 USF2Q15853 346 aaPredicted RBP9.88□□□□□ -0.83
VARS-227ENST00000489979 BSXQ3C1V8 233 aa9.88□□□□□ -0.83
VARS-227ENST00000489979 SIGLEC15Q6ZMC9 328 aa9.88□□□□□ -0.83
VARS-227ENST00000489979 Q8N1X5 172 aa9.88□□□□□ -0.83
VARS-227ENST00000489979 SAMD12Q8N8I0 201 aa9.88□□□□□ -0.83
VARS-227ENST00000489979 GPX8Q8TED1 209 aa9.88□□□□□ -0.83
VARS-227ENST00000489979 TMED3Q9Y3Q3 217 aa9.88□□□□□ -0.83
VARS-227ENST00000489979 RPS10-NUDT3A0A1W2PQS6 291 aa9.87□□□□□ -0.83
VARS-227ENST00000489979 IL4P05112 153 aa9.87□□□□□ -0.83
VARS-227ENST00000489979 PI3P19957 117 aa9.87□□□□□ -0.83
VARS-227ENST00000489979 OR10J1P30954 320 aa9.87□□□□□ -0.83
VARS-227ENST00000489979 RND2P52198 227 aa9.87□□□□□ -0.83
VARS-227ENST00000489979 YPEL3P61236 119 aaPredicted RBP9.87□□□□□ -0.83
VARS-227ENST00000489979 RND3P61587 244 aa9.87□□□□□ -0.83
VARS-227ENST00000489979 PRSS54Q6PEW0 395 aa9.87□□□□□ -0.83
VARS-227ENST00000489979 TP53RKQ96S44 253 aa9.87□□□□□ -0.83
VARS-227ENST00000489979 BUB3O43684 328 aa9.86□□□□□ -0.83
VARS-227ENST00000489979 ATG12O94817 140 aa9.86□□□□□ -0.83
VARS-227ENST00000489979 PGAM2P15259 253 aa9.86□□□□□ -0.83
VARS-227ENST00000489979 TGFBR1P36897 503 aa9.86□□□□□ -0.83
VARS-227ENST00000489979 FAM3BP58499 235 aaPredicted RBP9.86□□□□□ -0.83
VARS-227ENST00000489979 CROCCP3Q8IVE0 287 aa9.86□□□□□ -0.83
VARS-227ENST00000489979 C6orf223Q8N319 242 aa9.86□□□□□ -0.83
VARS-227ENST00000489979 ZNF709Q8N972 641 aa9.86□□□□□ -0.83
VARS-227ENST00000489979 LINC00052Q96N35 136 aa9.86□□□□□ -0.83
VARS-227ENST00000489979 ATG101Q9BSB4 218 aa9.86□□□□□ -0.83
VARS-227ENST00000489979 SAV1Q9H4B6 383 aaPredicted RBP9.86□□□□□ -0.83
VARS-227ENST00000489979 SCRT2Q9NQ03 307 aa9.86□□□□□ -0.83
VARS-227ENST00000489979 YTHDF2Q9Y5A9 579 aaKnown RBP9.86□□□□□ -0.83
VARS-227ENST00000489979 A0A0G2JRQ6 117 aa9.85□□□□□ -0.83
VARS-227ENST00000489979 NBDYA0A0U1RRE5 68 aa9.85□□□□□ -0.83
VARS-227ENST00000489979 LOC102723971A0A1B0GUV8 181 aa9.85□□□□□ -0.83
VARS-227ENST00000489979 GSTZ1O43708 216 aaPredicted RBP9.85□□□□□ -0.83
VARS-227ENST00000489979 HBE1P02100 147 aa9.85□□□□□ -0.83
VARS-227ENST00000489979 PIGPP57054 158 aa9.85□□□□□ -0.83
VARS-227ENST00000489979 DAD1P61803 113 aa9.85□□□□□ -0.83
VARS-227ENST00000489979 FOXI2Q6ZQN5 318 aa9.85□□□□□ -0.83
VARS-227ENST00000489979 C1orf158Q8N1D5 194 aa9.85□□□□□ -0.83
VARS-227ENST00000489979 C15orf53Q8NAA6 179 aa9.85□□□□□ -0.83
VARS-227ENST00000489979 OR4B1Q8NGF8 309 aa9.85□□□□□ -0.83
VARS-227ENST00000489979 C7orf50Q9BRJ6 194 aaKnown RBP9.85□□□□□ -0.83
VARS-227ENST00000489979 SLC35B3Q9H1N7 401 aa9.85□□□□□ -0.83
VARS-227ENST00000489979 GOLT1BQ9Y3E0 138 aa9.85□□□□□ -0.83
VARS-227ENST00000489979 C3orf85A0A1B0GTC6 90 aa9.84□□□□□ -0.83
VARS-227ENST00000489979 M0QYG6 137 aa9.84□□□□□ -0.83
VARS-227ENST00000489979 SLC25A4P12235 298 aa9.84□□□□□ -0.83
VARS-227ENST00000489979 RCVRNP35243 200 aa9.84□□□□□ -0.83
VARS-227ENST00000489979 HTR2BP41595 481 aa9.84□□□□□ -0.83
VARS-227ENST00000489979 SPCS3P61009 180 aa9.84□□□□□ -0.83
VARS-227ENST00000489979 TRIM16LQ309B1 348 aa9.84□□□□□ -0.83
VARS-227ENST00000489979 SP6Q3SY56 376 aa9.84□□□□□ -0.83
VARS-227ENST00000489979 GSG1LQ6UXU4 331 aa9.84□□□□□ -0.83
VARS-227ENST00000489979 RNASE11Q8TAA1 199 aaKnown RBP9.84□□□□□ -0.83
VARS-227ENST00000489979 RRNAD1Q96FB5 475 aaKnown RBP9.84□□□□□ -0.83
VARS-227ENST00000489979 ZNF486Q96H40 463 aaPredicted RBP9.84□□□□□ -0.83
VARS-227ENST00000489979 WDR12Q9GZL7 423 aaKnown RBP9.84□□□□□ -0.83
VARS-227ENST00000489979 VCX3AQ9NNX9 186 aa9.84□□□□□ -0.83
VARS-227ENST00000489979 NXPH3O95157 252 aa9.83□□□□□ -0.84
VARS-227ENST00000489979 TOMM40O96008 361 aa9.83□□□□□ -0.84
VARS-227ENST00000489979 RD3LP0DJH9 198 aa9.83□□□□□ -0.84
VARS-227ENST00000489979 RPS19P39019 145 aaKnown RBP9.83□□□□□ -0.84
VARS-227ENST00000489979 NEDD8Q15843 81 aa9.83□□□□□ -0.84
VARS-227ENST00000489979 RRN3P1Q2M238 152 aa9.83□□□□□ -0.84
VARS-227ENST00000489979 C2orf83Q53S99 150 aa9.83□□□□□ -0.84
VARS-227ENST00000489979 SNX29P2Q8IUI4 249 aa9.83□□□□□ -0.84
VARS-227ENST00000489979 OR51G1Q8NGK1 321 aa9.83□□□□□ -0.84
VARS-227ENST00000489979 ZNRF2Q8NHG8 242 aa9.83□□□□□ -0.84
VARS-227ENST00000489979 RNASEH2CQ8TDP1 164 aaKnown RBP9.83□□□□□ -0.84
VARS-227ENST00000489979 NPIPB3Q92617 1050 aa9.83□□□□□ -0.84
VARS-227ENST00000489979 CLUHP3Q96NS8 147 aa9.83□□□□□ -0.84
VARS-227ENST00000489979 SCPEP1Q9HB40 452 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms