RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 OR4E1P0C645 316 aa10.34□□□□□ -0.75
SYNE1-226ENST00000488376 GBGT1Q8N5D6 347 aa10.34□□□□□ -0.75
SYNE1-226ENST00000488376 VSIRQ9H7M9 311 aa10.34□□□□□ -0.75
SYNE1-226ENST00000488376 RPS10-NUDT3A0A1W2PQS6 291 aa10.33□□□□□ -0.76
SYNE1-226ENST00000488376 LYRM1O43325 122 aa10.33□□□□□ -0.76
SYNE1-226ENST00000488376 DFFBO76075 338 aa10.33□□□□□ -0.76
SYNE1-226ENST00000488376 SLC25A6P12236 298 aa10.33□□□□□ -0.76
SYNE1-226ENST00000488376 OR10J1P30954 320 aa10.33□□□□□ -0.76
SYNE1-226ENST00000488376 LAMTOR1Q6IAA8 161 aa10.33□□□□□ -0.76
SYNE1-226ENST00000488376 TCF24Q7RTU0 167 aa10.33□□□□□ -0.76
SYNE1-226ENST00000488376 LYG2Q86SG7 212 aa10.33□□□□□ -0.76
SYNE1-226ENST00000488376 SPATA25Q9BR10 227 aa10.33□□□□□ -0.76
SYNE1-226ENST00000488376 GINS3Q9BRX5 216 aa10.33□□□□□ -0.76
SYNE1-226ENST00000488376 TMED3Q9Y3Q3 217 aa10.33□□□□□ -0.76
SYNE1-226ENST00000488376 U3KQ87 197 aa10.33□□□□□ -0.76
SYNE1-226ENST00000488376 CENPXA8MT69 81 aa10.32□□□□□ -0.76
SYNE1-226ENST00000488376 SLC25A4P12235 298 aa10.32□□□□□ -0.76
SYNE1-226ENST00000488376 C4orf46Q504U0 113 aa10.32□□□□□ -0.76
SYNE1-226ENST00000488376 APRG1Q8IVJ8 170 aa10.32□□□□□ -0.76
SYNE1-226ENST00000488376 FAM24BQ8N5W8 94 aa10.32□□□□□ -0.76
SYNE1-226ENST00000488376 OR1S2Q8NGQ3 325 aa10.32□□□□□ -0.76
SYNE1-226ENST00000488376 C7orf50Q9BRJ6 194 aaKnown RBP10.32□□□□□ -0.76
SYNE1-226ENST00000488376 C20orf85Q9H1P6 137 aa10.32□□□□□ -0.76
SYNE1-226ENST00000488376 CACFD1Q9UGQ2 172 aa10.32□□□□□ -0.76
SYNE1-226ENST00000488376 IGKV1D-37A0A075B6S9 117 aa10.31□□□□□ -0.76
SYNE1-226ENST00000488376 OR4C46A6NHA9 309 aa10.31□□□□□ -0.76
SYNE1-226ENST00000488376 WRBO00258 174 aa10.31□□□□□ -0.76
SYNE1-226ENST00000488376 IFNA4P05014 189 aa10.31□□□□□ -0.76
SYNE1-226ENST00000488376 CRYBB3P26998 211 aa10.31□□□□□ -0.76
SYNE1-226ENST00000488376 GAMTQ14353 236 aa10.31□□□□□ -0.76
SYNE1-226ENST00000488376 USF2Q15853 346 aaPredicted RBP10.31□□□□□ -0.76
SYNE1-226ENST00000488376 WFDC3Q8IUB2 231 aa10.31□□□□□ -0.76
SYNE1-226ENST00000488376 GGTLC1Q9BX51 225 aa10.31□□□□□ -0.76
SYNE1-226ENST00000488376 EDA2RQ9HAV5 297 aa10.31□□□□□ -0.76
SYNE1-226ENST00000488376 TBC1D24Q9ULP9 559 aa10.31□□□□□ -0.76
SYNE1-226ENST00000488376 PAIP2BQ9ULR5 123 aaKnown RBP10.31□□□□□ -0.76
SYNE1-226ENST00000488376 NBEAL2Q6ZNJ1 2754 aa10.3□□□□□ -0.76
SYNE1-226ENST00000488376 TRAV6A0A075B6T7 132 aa10.3□□□□□ -0.76
SYNE1-226ENST00000488376 TRAV30A0A087WSZ9 112 aa10.3□□□□□ -0.76
SYNE1-226ENST00000488376 FAM90A26D6RGX4 464 aa10.3□□□□□ -0.76
SYNE1-226ENST00000488376 PRSS46E5RG02 174 aa10.3□□□□□ -0.76
SYNE1-226ENST00000488376 H3BP45 60 aa10.3□□□□□ -0.76
SYNE1-226ENST00000488376 SYNGR2O43760 224 aa10.3□□□□□ -0.76
SYNE1-226ENST00000488376 NPPCP23582 126 aa10.3□□□□□ -0.76
SYNE1-226ENST00000488376 YPEL3P61236 119 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-226ENST00000488376 ZNF90Q03938 601 aa10.3□□□□□ -0.76
SYNE1-226ENST00000488376 ETFRF1Q6IPR1 90 aa10.3□□□□□ -0.76
SYNE1-226ENST00000488376 OR4D5Q8NGN0 318 aa10.3□□□□□ -0.76
SYNE1-226ENST00000488376 SEC22CQ9BRL7 303 aa10.3□□□□□ -0.76
SYNE1-226ENST00000488376 MS4A6AQ9H2W1 248 aa10.3□□□□□ -0.76
SYNE1-226ENST00000488376 IGKV1OR2-108A0A075B7D4 117 aa10.29□□□□□ -0.76
SYNE1-226ENST00000488376 LOC102724200A0A096LPH7 203 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-226ENST00000488376 CCSO14618 274 aa10.29□□□□□ -0.76
SYNE1-226ENST00000488376 TCRBP04435 133 aa10.29□□□□□ -0.76
SYNE1-226ENST00000488376 IL4P05112 153 aa10.29□□□□□ -0.76
SYNE1-226ENST00000488376 PSG1P11464 419 aa10.29□□□□□ -0.76
SYNE1-226ENST00000488376 RPL35AP18077 110 aaKnown RBP10.29□□□□□ -0.76
SYNE1-226ENST00000488376 P2RY1P47900 373 aa10.29□□□□□ -0.76
SYNE1-226ENST00000488376 POLR2GP62487 172 aaKnown RBP eCLIP10.29□□□□□ -0.76
SYNE1-226ENST00000488376 NOXA1Q86UR1 476 aa10.29□□□□□ -0.76
SYNE1-226ENST00000488376 COQ8AQ8NI60 647 aa10.29□□□□□ -0.76
SYNE1-226ENST00000488376 MUC7Q8TAX7 377 aa10.29□□□□□ -0.76
SYNE1-226ENST00000488376 METTL26Q96S19 204 aa10.29□□□□□ -0.76
SYNE1-226ENST00000488376 CCDC32Q9BV29 185 aa10.29□□□□□ -0.76
SYNE1-226ENST00000488376 MAP6D1Q9H9H5 199 aa10.29□□□□□ -0.76
SYNE1-226ENST00000488376 NUDT15Q9NV35 164 aa10.29□□□□□ -0.76
SYNE1-226ENST00000488376 U3KQE9 123 aa10.29□□□□□ -0.76
SYNE1-226ENST00000488376 PIGBOS1A0A0B4J2F0 54 aa10.28□□□□□ -0.76
SYNE1-226ENST00000488376 CCNKO75909 580 aa10.28□□□□□ -0.76
SYNE1-226ENST00000488376 TOMM40O96008 361 aa10.28□□□□□ -0.76
SYNE1-226ENST00000488376 RD3LP0DJH9 198 aa10.28□□□□□ -0.76
SYNE1-226ENST00000488376 RPL11P62913 178 aaKnown RBP10.28□□□□□ -0.76
SYNE1-226ENST00000488376 IFITM3Q01628 133 aa10.28□□□□□ -0.76
SYNE1-226ENST00000488376 ID3Q02535 119 aa10.28□□□□□ -0.76
SYNE1-226ENST00000488376 SPANXN5Q5MJ07 72 aa10.28□□□□□ -0.76
SYNE1-226ENST00000488376 GSG1LQ6UXU4 331 aa10.28□□□□□ -0.76
SYNE1-226ENST00000488376 OR51G1Q8NGK1 321 aa10.28□□□□□ -0.76
SYNE1-226ENST00000488376 Q8WTZ3 238 aa10.28□□□□□ -0.76
SYNE1-226ENST00000488376 MITD1Q8WV92 249 aa10.28□□□□□ -0.76
SYNE1-226ENST00000488376 OVOL2Q9BRP0 275 aa10.28□□□□□ -0.76
SYNE1-226ENST00000488376 SSSCA1O60232 199 aa10.27□□□□□ -0.77
SYNE1-226ENST00000488376 SCGB2A1O75556 95 aa10.27□□□□□ -0.77
SYNE1-226ENST00000488376 MED6O75586 246 aa10.27□□□□□ -0.77
SYNE1-226ENST00000488376 GPX4P36969 197 aaPredicted RBP10.27□□□□□ -0.77
SYNE1-226ENST00000488376 PAX9P55771 341 aa10.27□□□□□ -0.77
SYNE1-226ENST00000488376 STPG3Q8N7X2 389 aa10.27□□□□□ -0.77
SYNE1-226ENST00000488376 STXBP6Q8NFX7 210 aa10.27□□□□□ -0.77
SYNE1-226ENST00000488376 SLC35E1Q96K37 410 aa10.27□□□□□ -0.77
SYNE1-226ENST00000488376 RABAC1Q9UI14 185 aa10.27□□□□□ -0.77
SYNE1-226ENST00000488376 ZFP92A6NM28 416 aa10.26□□□□□ -0.77
SYNE1-226ENST00000488376 SCGB1D2O95969 90 aa10.26□□□□□ -0.77
SYNE1-226ENST00000488376 IFNA21P01568 189 aa10.26□□□□□ -0.77
SYNE1-226ENST00000488376 HNRNPCP07910 306 aaKnown RBP eCLIP10.26□□□□□ -0.77
SYNE1-226ENST00000488376 NKX2-1P43699 371 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-226ENST00000488376 ATP5IP56385 69 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-226ENST00000488376 OR2F1Q13607 317 aa10.26□□□□□ -0.77
SYNE1-226ENST00000488376 IAH1Q2TAA2 248 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-226ENST00000488376 LEMD1Q68G75 181 aa10.26□□□□□ -0.77
SYNE1-226ENST00000488376 ZFAND6Q6FIF0 208 aa10.26□□□□□ -0.77
SYNE1-226ENST00000488376 C16orf54Q6UWD8 224 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms