RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 RPUSD1Q9UJJ7 312 aaKnown RBP9.1□□□□□ -0.95
HDAC6-228ENST00000486227 PCDH15Q96QU1 1955 aa9.1□□□□□ -0.95
HDAC6-228ENST00000486227 UPK2O00526 184 aa9.1□□□□□ -0.95
HDAC6-228ENST00000486227 DKK1O94907 266 aa9.1□□□□□ -0.95
HDAC6-228ENST00000486227 UQCRFS1P47985 274 aa9.1□□□□□ -0.95
HDAC6-228ENST00000486227 ZNF324O75467 553 aaPredicted RBP9.1□□□□□ -0.95
HDAC6-228ENST00000486227 CD24P25063 80 aa9.1□□□□□ -0.95
HDAC6-228ENST00000486227 TEX38Q6PEX7 206 aa9.1□□□□□ -0.95
HDAC6-228ENST00000486227 OR10J6PQ8NGY7 276 aa9.1□□□□□ -0.95
HDAC6-228ENST00000486227 MED13Q9UHV7 2174 aa9.1□□□□□ -0.95
HDAC6-228ENST00000486227 COL4A4P53420 1690 aaPredicted RBP9.1□□□□□ -0.95
HDAC6-228ENST00000486227 RBFOX2O43251 390 aaKnown RBP eCLIP9.1□□□□□ -0.95
HDAC6-228ENST00000486227 PRSS1P07477 247 aa9.1□□□□□ -0.95
HDAC6-228ENST00000486227 LYRM7Q5U5X0 104 aa9.1□□□□□ -0.95
HDAC6-228ENST00000486227 RPP25LQ8N5L8 163 aaKnown RBP9.1□□□□□ -0.95
HDAC6-228ENST00000486227 UFC1Q9Y3C8 167 aa9.1□□□□□ -0.95
HDAC6-228ENST00000486227 PFN1P07737 140 aaKnown RBP9.09□□□□□ -0.95
HDAC6-228ENST00000486227 WT1P19544 449 aaPredicted RBP9.09□□□□□ -0.95
HDAC6-228ENST00000486227 RELBQ01201 579 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 LINC01551Q86U37 167 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 COL4A3Q01955 1670 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 OR4C46A6NHA9 309 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 NPPCP23582 126 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 TMEM78Q5T7P6 136 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 FAM19A2Q8N3H0 131 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 RNF138Q8WVD3 245 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 C20orf144Q9BQM9 153 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 GNB1LQ9BYB4 327 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 IGKV1D-17A0A075B6S4 117 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 TRAV9-2A0A087WT02 112 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 C15orf61A6NNL5 157 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 IGKV1-5P01602 117 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 IL4P05112 153 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 LINC00205P59089 165 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 OR10J3Q5JRS4 329 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 DDB2Q92466 427 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 PRSS22Q9GZN4 317 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 B4DSR2 109 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 RAB9AP51151 201 aa9.09□□□□□ -0.95
HDAC6-228ENST00000486227 TRBV6-6A0A0A6YYG2 114 aa9.08□□□□□ -0.96
HDAC6-228ENST00000486227 CGAP01215 116 aa9.08□□□□□ -0.96
HDAC6-228ENST00000486227 LINC00305Q7Z4B0 112 aa9.08□□□□□ -0.96
HDAC6-228ENST00000486227 SPOCK3Q9BQ16 436 aa9.08□□□□□ -0.96
HDAC6-228ENST00000486227 HSPB7Q9UBY9 170 aa9.08□□□□□ -0.96
HDAC6-228ENST00000486227 TMEM178BH3BS89 294 aa9.08□□□□□ -0.96
HDAC6-228ENST00000486227 ADIPOQQ15848 244 aa9.08□□□□□ -0.96
HDAC6-228ENST00000486227 NEUROG1Q92886 237 aa9.08□□□□□ -0.96
HDAC6-228ENST00000486227 CRIM1Q9NZV1 1036 aa9.08□□□□□ -0.96
HDAC6-228ENST00000486227 POLR3KQ9Y2Y1 108 aaPredicted RBP9.08□□□□□ -0.96
HDAC6-228ENST00000486227 PLCE1Q9P212 2302 aa9.08□□□□□ -0.96
HDAC6-228ENST00000486227 IGHV3OR16-13A0A075B7E8 117 aa9.08□□□□□ -0.96
HDAC6-228ENST00000486227 IGHV3-74A0A0B4J1X5 117 aa9.08□□□□□ -0.96
HDAC6-228ENST00000486227 OCC1Q8TAD7 63 aa9.08□□□□□ -0.96
HDAC6-228ENST00000486227 PPP1R27Q86WC6 154 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 RAX2Q96IS3 184 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 MRPL32Q9BYC8 188 aaKnown RBP9.07□□□□□ -0.96
HDAC6-228ENST00000486227 IGKV1-6A0A0C4DH72 117 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 PGPEP1LA6NFU8 196 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 OR2T8A6NH00 312 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 CGB1A6NKQ9 187 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 RPL7P18124 248 aaKnown RBP9.07□□□□□ -0.96
HDAC6-228ENST00000486227 NMUP48645 174 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 PRO3102Q9H379 93 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 FREM1Q5H8C1 2179 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 MALRD1Q5VYJ5 2156 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 TRAV40A0A0B4J280 105 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 A0A1B0GWJ7 208 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 IGHV3-23P01764 117 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 HBBP68871 147 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 OSTCQ9NRP0 149 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 IZUMO1RA6ND01 250 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 FBLL1A6NHQ2 334 aaKnown RBP9.07□□□□□ -0.96
HDAC6-228ENST00000486227 RRN3P1Q2M238 152 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 TMEM200BQ69YZ2 307 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 CDPF1Q6NVV7 123 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 TMEM144Q7Z5S9 345 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 ORAOV1Q8WV07 137 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 CACNG8Q8WXS5 425 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 WDR83OSQ9Y284 106 aa9.07□□□□□ -0.96
HDAC6-228ENST00000486227 GAGE1Q13065 139 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 LDLRAD2Q5SZI1 272 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 Q6ZS49 121 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 FAM169BQ8N8A8 192 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 DUX5Q96PT3 197 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 LINC00473A8K010 186 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 C10orf55Q5SWW7 151 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 MIR17HGQ75NE6 70 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 OR10AG1Q8NH19 301 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 FOXA2Q9Y261 457 aaPredicted RBP9.06□□□□□ -0.96
HDAC6-228ENST00000486227 WIPF3A6NGB9 483 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 LY6HO94772 140 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 SLC25A16P16260 332 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 TMEM177Q53S58 311 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 Q6ZR03 302 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 ARPC1AQ92747 370 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 RNF166Q96A37 237 aaPredicted RBP9.06□□□□□ -0.96
HDAC6-228ENST00000486227 IGHV3OR16-12A0A075B7B8 117 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 IGHV3OR16-8A0A075B7F1 116 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 A0A0G2JRQ6 117 aa9.06□□□□□ -0.96
HDAC6-228ENST00000486227 NBEAP1P0C6P0 100 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 137.8 ms