RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 HTR2CP28335 458 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 RPL35P42766 123 aaKnown RBP3.16□□□□□ -1.9
USP4-209ENST00000475873 MFAP4P55083 255 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 RPL37AP61513 92 aaKnown RBP3.16□□□□□ -1.9
USP4-209ENST00000475873 RAB11AP62491 216 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 WT1-ASQ06250 92 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 ARFRP1Q13795 201 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 RAB11BQ15907 218 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 GUK1Q16774 197 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 RRN3P1Q2M238 152 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 C12orf73Q69YU5 71 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 XAF1Q6GPH4 301 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 OR10K2Q6IF99 312 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 NFE4Q86UQ8 179 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 TMEM17Q86X19 198 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 GDPD1Q8N9F7 314 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 RNASE8Q8TDE3 154 aaKnown RBP3.16□□□□□ -1.9
USP4-209ENST00000475873 GPX8Q8TED1 209 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 GLYATL2Q8WU03 294 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 AP3S1Q92572 193 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 GNPNAT1Q96EK6 184 aaPredicted RBP3.16□□□□□ -1.9
USP4-209ENST00000475873 CPNE2Q96FN4 548 aaPredicted RBP3.16□□□□□ -1.9
USP4-209ENST00000475873 TMEM80Q96HE8 168 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 C4orf36Q96KX1 117 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 TCEAL7Q9BRU2 100 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 MND1Q9BWT6 205 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 CCDC90BQ9GZT6 254 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 NXF2Q9GZY0 626 aaKnown RBP3.16□□□□□ -1.9
USP4-209ENST00000475873 KCNK15Q9H427 330 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 GEMIN7Q9H840 131 aaKnown RBP3.16□□□□□ -1.9
USP4-209ENST00000475873 PLEKHA2Q9HB19 425 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 PLGRKTQ9HBL7 147 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 TMBIM4Q9HC24 238 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 MGAT4AQ9UM21 535 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 ALG5Q9Y673 324 aa3.16□□□□□ -1.9
USP4-209ENST00000475873 A0A096LPF7 62 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 A0A1B0GV72 72 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 SAC3D1A6NKF1 404 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 TMEM212A6NML5 194 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 ZAR1LA6NP61 321 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 FAM25AB3EWG3 89 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 FAM25CB3EWG5 89 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 FAM25GB3EWG6 89 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 FAM90A26D6RGX4 464 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 NPIPB6E9PJ23 425 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 J3QLW9 94 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 IGLV2-14P01704 120 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 RLN1P04808 185 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 S100A8P05109 93 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 CD5P06127 495 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 CLEC2LP0C7M8 214 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 ZNF19P17023 458 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 HLA-GP17693 338 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 CELP19835 753 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 NUTF2P61970 127 aaKnown RBP3.15□□□□□ -1.91
USP4-209ENST00000475873 RPL8P62917 257 aaKnown RBP3.15□□□□□ -1.91
USP4-209ENST00000475873 ARL6IP1Q15041 203 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 Q56UQ5 140 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 MEDAGQ5VYS4 303 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 ZNF773Q6PK81 442 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 Q6ZRU5 148 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 S100A7AQ86SG5 101 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 FAM89BQ8N5H3 189 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 OR2D3Q8NGH3 330 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 STOML3Q8TAV4 291 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 NRG4Q8WWG1 115 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 NUDT11Q96G61 164 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 MRPL48Q96GC5 212 aaKnown RBP3.15□□□□□ -1.91
USP4-209ENST00000475873 VSIG2Q96IQ7 327 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 PFDN5Q99471 154 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 S100A13Q99584 98 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 KRTAP4-8Q9BYQ9 185 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 OR51M1Q9H341 326 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 EFCAB1Q9HAE3 211 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 IFT46Q9NQC8 304 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 MSRB1Q9NZV6 116 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 AK3Q9UIJ7 227 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 URGCP-MRPS24S4R325 110 aa3.15□□□□□ -1.91
USP4-209ENST00000475873 TEX13DA0A0J9YY54 714 aaPredicted RBP3.14□□□□□ -1.91
USP4-209ENST00000475873 FAM240BA0A1B0GVZ2 78 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 I3L2K1 104 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 ARPC5O15511 151 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 FAM107AO95990 144 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 CST1P01037 141 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 SERPINE2P07093 398 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 CRHBPP24387 322 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 P2RY1P47900 373 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 DAPP51397 102 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 KRTAP10-8P60410 259 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 EIF4EBP1Q13541 118 aaPredicted RBP3.14□□□□□ -1.91
USP4-209ENST00000475873 OR5I1Q13606 314 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 TIMM50Q3ZCQ8 353 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 AWAT2Q6E213 333 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 MOB1BQ7L9L4 216 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 ERASQ7Z444 233 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 BOD1L2Q8IYS8 172 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 OR5AK2Q8NH90 309 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 OR10J5Q8NHC4 309 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 DYNC2LI1Q8TCX1 351 aa3.14□□□□□ -1.91
USP4-209ENST00000475873 UFD1Q92890 307 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms