RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044		A0A087WX48	190 aa		0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	E2F6	O75461	281 aa		0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	S100A4	P26447	101 aa	Known RBP	0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	OOSP2	Q86WS3	158 aa		0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	OR52R1	Q8NGF1	315 aa		0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	PRAP1	Q96NZ9	151 aa		0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	TLNRD1	Q9H1K6	362 aa		0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	OSTC	Q9NRP0	149 aa		0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	NHP2	Q9NX24	153 aa	Known RBP	0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	UBAP1	Q9NZ09	502 aa		0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	IDI2-AS1	Q9NZ38	188 aa		0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	GLTP	Q9NZD2	209 aa		0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	CYSLTR1	Q9Y271	337 aa		0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	PRELID3B	Q9Y3B1	194 aa		0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044		V9GYY5	206 aa	Predicted RBP	0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	OBSL1	O75147	1896 aa		0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	SCN3A	Q9NY46	2000 aa		0.93	□□□□□ -2.26
PTCD3-209	ENST00000472044	CCDC144A	A2RUR9	1427 aa		0.93	□□□□□ -2.26
PTCD3-209	ENST00000472044	TRAV1-1	A0A0B4J248	108 aa		0.93	□□□□□ -2.26
PTCD3-209	ENST00000472044	TMEM114	B3SHH9	223 aa		0.93	□□□□□ -2.26
PTCD3-209	ENST00000472044	SERPINE1	P05121	402 aa		0.93	□□□□□ -2.26
PTCD3-209	ENST00000472044	PPIB	P23284	216 aa	Known RBP	0.93	□□□□□ -2.26
PTCD3-209	ENST00000472044	RHOG	P84095	191 aa		0.93	□□□□□ -2.26
PTCD3-209	ENST00000472044	OR52L1	Q8NGH7	329 aa		0.93	□□□□□ -2.26
PTCD3-209	ENST00000472044	C14orf105	Q9NVL8	296 aa		0.93	□□□□□ -2.26
PTCD3-209	ENST00000472044	EPDR1	Q9UM22	224 aa		0.93	□□□□□ -2.26
PTCD3-209	ENST00000472044	HS3ST2	Q9Y278	367 aa		0.93	□□□□□ -2.26
PTCD3-209	ENST00000472044	MCM3AP	O60318	1980 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	ADGRB2	O60241	1585 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	hCG_1818297	A0A087WSY0	165 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044		A8MT66	165 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	PDE6D	O43924	150 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	HYPM	O75409	117 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	UBL3	O95164	117 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	C8G	P07360	202 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	OR4E1	P0C645	316 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	CASP1	P29466	404 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	SSR2	P43308	183 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	AP3S2	P59780	193 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	RAB4B	P61018	213 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	DEFB115	Q30KQ5	88 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	OR51A2	Q8NGJ7	313 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	OR13D1	Q8NGV5	346 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	OR10J5	Q8NHC4	309 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	GPR146	Q96CH1	333 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	MRPL57	Q9BQC6	102 aa	Known RBP	0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	FBXO5	Q9UKT4	447 aa		0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	ARHGEF28	Q8N1W1	1705 aa	Known RBP	0.92	□□□□□ -2.26
PTCD3-209	ENST00000472044	MYH10	P35580	1976 aa		0.91	□□□□□ -2.26
PTCD3-209	ENST00000472044		A0A087X0T9	212 aa		0.91	□□□□□ -2.26
PTCD3-209	ENST00000472044	C7orf71	A4D174	169 aa		0.91	□□□□□ -2.26
PTCD3-209	ENST00000472044		J3QRK9	145 aa		0.91	□□□□□ -2.26
PTCD3-209	ENST00000472044	LYZL6	O75951	148 aa		0.91	□□□□□ -2.26
PTCD3-209	ENST00000472044	CTXN2	P0C2S0	81 aa		0.91	□□□□□ -2.26
PTCD3-209	ENST00000472044	ERVS71-1	P61550	626 aa		0.91	□□□□□ -2.26
PTCD3-209	ENST00000472044		Q6Q795	121 aa		0.91	□□□□□ -2.26
PTCD3-209	ENST00000472044	LCA10	Q71F78	164 aa		0.91	□□□□□ -2.26
PTCD3-209	ENST00000472044	FAM19A2	Q8N3H0	131 aa		0.91	□□□□□ -2.26
PTCD3-209	ENST00000472044	ZNF418	Q8TF45	676 aa	Predicted RBP	0.91	□□□□□ -2.26
PTCD3-209	ENST00000472044	ADAT3	Q96EY9	351 aa	Predicted RBP	0.91	□□□□□ -2.26
PTCD3-209	ENST00000472044	RNASE7	Q9H1E1	156 aa	Known RBP	0.91	□□□□□ -2.26
PTCD3-209	ENST00000472044	C22orf24	Q9Y442	160 aa		0.91	□□□□□ -2.26
PTCD3-209	ENST00000472044	TRAV12-1	A0A0B4J245	112 aa		0.9	□□□□□ -2.27
PTCD3-209	ENST00000472044	IGKV1-9	A0A0C4DH69	117 aa		0.9	□□□□□ -2.27
PTCD3-209	ENST00000472044	PROSC	O94903	275 aa		0.9	□□□□□ -2.27
PTCD3-209	ENST00000472044	S100A6	P06703	90 aa		0.9	□□□□□ -2.27
PTCD3-209	ENST00000472044	TSN	Q15631	228 aa	Known RBP	0.9	□□□□□ -2.27
PTCD3-209	ENST00000472044	SFT2D1	Q8WV19	159 aa		0.9	□□□□□ -2.27
PTCD3-209	ENST00000472044	LINC00526	Q96FQ7	95 aa		0.9	□□□□□ -2.27
PTCD3-209	ENST00000472044	TMEM133	Q9H2Q1	129 aa		0.9	□□□□□ -2.27
PTCD3-209	ENST00000472044	UQCC1	Q9NVA1	299 aa		0.9	□□□□□ -2.27
PTCD3-209	ENST00000472044	TVP23B	Q9NYZ1	205 aa		0.9	□□□□□ -2.27
PTCD3-209	ENST00000472044	SLC35A3	Q9Y2D2	325 aa		0.9	□□□□□ -2.27
PTCD3-209	ENST00000472044	UBR2	Q8IWV8	1755 aa		0.9	□□□□□ -2.27
PTCD3-209	ENST00000472044		M0R2N4	97 aa		0.89	□□□□□ -2.27
PTCD3-209	ENST00000472044	SULT1B1	O43704	296 aa		0.89	□□□□□ -2.27
PTCD3-209	ENST00000472044	MGST1	P10620	155 aa	Known RBP	0.89	□□□□□ -2.27
PTCD3-209	ENST00000472044	FADD	Q13158	208 aa		0.89	□□□□□ -2.27
PTCD3-209	ENST00000472044	AKIRIN2	Q53H80	203 aa		0.89	□□□□□ -2.27
PTCD3-209	ENST00000472044	RNASE10	Q5GAN6	216 aa	Known RBP	0.89	□□□□□ -2.27
PTCD3-209	ENST00000472044	SLC25A40	Q8TBP6	338 aa		0.89	□□□□□ -2.27
PTCD3-209	ENST00000472044	WFDC5	Q8TCV5	224 aa		0.89	□□□□□ -2.27
PTCD3-209	ENST00000472044	ITFG2	Q969R8	447 aa		0.89	□□□□□ -2.27
PTCD3-209	ENST00000472044	HIST1H2BL	Q99880	126 aa		0.89	□□□□□ -2.27
PTCD3-209	ENST00000472044	PARVB	Q9HBI1	364 aa		0.89	□□□□□ -2.27
PTCD3-209	ENST00000472044	KLK9	Q9UKQ9	250 aa		0.89	□□□□□ -2.27
PTCD3-209	ENST00000472044	RIMBP3C	A6NJZ7	1639 aa		0.89	□□□□□ -2.27
PTCD3-209	ENST00000472044	RIMBP3B	A6NNM3	1639 aa		0.89	□□□□□ -2.27
PTCD3-209	ENST00000472044	RIMBP3	Q9UFD9	1639 aa		0.89	□□□□□ -2.27
PTCD3-209	ENST00000472044	PLXNA4	Q9HCM2	1894 aa		0.88	□□□□□ -2.27
PTCD3-209	ENST00000472044	PCF11	O94913	1555 aa	Known RBP	0.88	□□□□□ -2.27
PTCD3-209	ENST00000472044	OR7C1	O76099	320 aa	Predicted RBP	0.88	□□□□□ -2.27
PTCD3-209	ENST00000472044	ZNF93	P35789	620 aa	Predicted RBP	0.88	□□□□□ -2.27
PTCD3-209	ENST00000472044	SPA17	Q15506	151 aa		0.88	□□□□□ -2.27
PTCD3-209	ENST00000472044	OR8D4	Q8NGM9	314 aa		0.88	□□□□□ -2.27
PTCD3-209	ENST00000472044	BTF3L4	Q96K17	158 aa		0.88	□□□□□ -2.27
PTCD3-209	ENST00000472044	TRBV6-7	A0A0A0MS04	114 aa		0.87	□□□□□ -2.27
PTCD3-209	ENST00000472044	CYB5B	O43169	146 aa		0.87	□□□□□ -2.27
PTCD3-209	ENST00000472044	SMIM17	P0DL12	118 aa		0.87	□□□□□ -2.27
PTCD3-209	ENST00000472044	RNASE4	P34096	147 aa	Known RBP	0.87	□□□□□ -2.27

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