RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 CDH26Q8IXH8 852 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 CLRN3Q8NCR9 226 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 OR10W1Q8NGF6 305 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 OR8D4Q8NGM9 314 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 OR2G2Q8NGZ5 317 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 LSM10Q969L4 123 aaKnown RBP1.5□□□□□ -2.17
USP40-211ENST00000464956 C9orf85Q96MD7 179 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 KIR2DL4Q99706 377 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 C20orf144Q9BQM9 153 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 AIFM2Q9BRQ8 373 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 KRTAP9-8Q9BYQ0 159 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 OR51M1Q9H341 326 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 FGF20Q9NP95 211 aaPredicted RBP1.5□□□□□ -2.17
USP40-211ENST00000464956 ARMC1Q9NVT9 282 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 RDH8Q9NYR8 311 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 NDUFAF4Q9P032 175 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 LINC00474Q9P2X8 69 aa1.5□□□□□ -2.17
USP40-211ENST00000464956 IGLV8-61A0A075B6I0 122 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 A0A075B6Q4 140 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 IGHV1OR15-1A0A075B7D0 117 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 TCRBV5S2A0A599 114 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 FABP12A6NFH5 140 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 I3L2K1 104 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 SULT1C2O00338 296 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 PDCD6O75340 191 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 MT-CO2P00403 227 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 IGLV2-14P01704 120 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 IGHV3-48P01763 117 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 OR10J4P0C629 311 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 RAB3AP20336 220 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 NUP62P37198 522 aaPredicted RBP1.49□□□□□ -2.17
USP40-211ENST00000464956 RFX2P48378 723 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 SERPINB10P48595 397 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 BRWD1-AS2P59051 145 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 RHOBP62745 196 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 HLA-DRB3P79483 266 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 WT1-ASQ06250 92 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 Q0VG73 95 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 CYLC2Q14093 348 aaPredicted RBP1.49□□□□□ -2.17
USP40-211ENST00000464956 ELOBQ15370 118 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 OR2B11Q5JQS5 317 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 C1orf137Q5JT78 98 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 OR2G6Q5TZ20 316 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 ZNF880Q6PDB4 577 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 FP248Q71RG6 208 aaPredicted RBP1.49□□□□□ -2.17
USP40-211ENST00000464956 KCTD9Q7L273 389 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 FUNDC1Q8IVP5 155 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 FAM219AQ8IW50 185 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 IQCF2Q8IXL9 164 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 ZNF680Q8NEM1 530 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 OR10G9Q8NGN4 311 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 OR1P1Q8NH06 330 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 TEX47Q8TBZ9 253 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 IL22RA2Q969J5 263 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 MCUR1Q96AQ8 359 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 UBE2WQ96B02 151 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 PINX1Q96BK5 328 aaKnown RBP1.49□□□□□ -2.17
USP40-211ENST00000464956 GPR146Q96CH1 333 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 SLC7A6OSQ96CW6 309 aaPredicted RBP1.49□□□□□ -2.17
USP40-211ENST00000464956 CMTM5Q96DZ9 223 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 C5orf30Q96GV9 206 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 FMO2Q99518 471 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 TBX5Q99593 518 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 ARPC5LQ9BPX5 153 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 SSBP4Q9BWG4 385 aaPredicted RBP1.49□□□□□ -2.17
USP40-211ENST00000464956 C20orf27Q9GZN8 174 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 GSN-AS1Q9NRJ2 163 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 BET1LQ9NYM9 111 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 PFDN2Q9UHV9 154 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 HAO1Q9UJM8 370 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 U3KQE9 123 aa1.49□□□□□ -2.17
USP40-211ENST00000464956 A0A1W2PP11 408 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 hDV102S1A0JD36 115 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 METTL15A6NJ78 407 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 OR4C45A6NMZ5 311 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 SOCS3O14543 225 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 RBFOX2O43251 390 aaKnown RBP eCLIP1.48□□□□□ -2.17
USP40-211ENST00000464956 BUB3O43684 328 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 SPINK4O60575 86 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 NDUFS6O75380 124 aaKnown RBP1.48□□□□□ -2.17
USP40-211ENST00000464956 TMEM50AO95807 157 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 CELP19835 753 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 SPRR2EP22531 72 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 RRM2P31350 389 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 SPRR2BP35325 72 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 SPRR2AP35326 72 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 ZNF93P35789 620 aaPredicted RBP1.48□□□□□ -2.17
USP40-211ENST00000464956 MEOX2P50222 304 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 ZNF138P52744 262 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 GBX2P52951 348 aaPredicted RBP1.48□□□□□ -2.17
USP40-211ENST00000464956 OR10A3P58181 314 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 NANOS3P60323 173 aaKnown RBP1.48□□□□□ -2.17
USP40-211ENST00000464956 EIF5AP63241 154 aaKnown RBP1.48□□□□□ -2.17
USP40-211ENST00000464956 COX6A2Q02221 97 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 CKAP4Q07065 602 aaKnown RBP1.48□□□□□ -2.17
USP40-211ENST00000464956 ST3GAL4Q11206 333 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 STX3Q13277 289 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 KRTAP13-3Q3SY46 172 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 SP6Q3SY56 376 aa1.48□□□□□ -2.17
USP40-211ENST00000464956 TIMM50Q3ZCQ8 353 aa1.48□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms