RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 SP9P0CG40 484 aa5.9□□□□□ -1.47
USP48-206ENST00000464577 KIR2DL2P43627 348 aaPredicted RBP5.9□□□□□ -1.47
USP48-206ENST00000464577 MLANAQ16655 118 aa5.9□□□□□ -1.47
USP48-206ENST00000464577 RNF151Q2KHN1 245 aa5.9□□□□□ -1.47
USP48-206ENST00000464577 ZNF833PQ6ZTB9 187 aa5.9□□□□□ -1.47
USP48-206ENST00000464577 MOGAT3Q86VF5 341 aa5.9□□□□□ -1.47
USP48-206ENST00000464577 PDPNQ86YL7 162 aa5.9□□□□□ -1.47
USP48-206ENST00000464577 OR4A5Q8NH83 315 aa5.9□□□□□ -1.47
USP48-206ENST00000464577 ST6GALNAC6Q969X2 333 aa5.9□□□□□ -1.47
USP48-206ENST00000464577 FMC1Q96HJ9 113 aa5.9□□□□□ -1.47
USP48-206ENST00000464577 NDFIP1Q9BT67 221 aa5.9□□□□□ -1.47
USP48-206ENST00000464577 RPUSD1Q9UJJ7 312 aaKnown RBP5.9□□□□□ -1.47
USP48-206ENST00000464577 IGKV1D-37A0A075B6S9 117 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 LOC102724200A0A096LPH7 203 aaPredicted RBP5.89□□□□□ -1.47
USP48-206ENST00000464577 hDV102S1A0JD36 115 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 SH2D7A6NKC9 451 aaPredicted RBP5.89□□□□□ -1.47
USP48-206ENST00000464577 LTAP01374 205 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 IGKV1-16P04430 117 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 ZNF883P0CG24 379 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 GATA4P43694 442 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 GNG5P63218 68 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 ASPHD1Q5U4P2 390 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 FAM71F2Q6NXP2 309 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 RBPMS2Q6ZRY4 209 aaKnown RBP5.89□□□□□ -1.47
USP48-206ENST00000464577 TCF24Q7RTU0 167 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 CNEP1R1Q8N9A8 125 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 H1FXQ92522 213 aaKnown RBP5.89□□□□□ -1.47
USP48-206ENST00000464577 PERPQ96FX8 193 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 MAP1LC3CQ9BXW4 147 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 DKK4Q9UBT3 224 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 HSPB8Q9UJY1 196 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 ZNF835Q9Y2P0 537 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 MUC21A0A0G2JKD1 596 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 MUC21A0A140T8X8 626 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 OR2T8A6NH00 312 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 M0QZ24 198 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 P01737 135 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 APOA2P02652 100 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 SLC25A5P05141 298 aaKnown RBP5.89□□□□□ -1.47
USP48-206ENST00000464577 PSG1P11464 419 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 SUB1P53999 127 aaKnown RBP eCLIP5.89□□□□□ -1.478e-6■■■□□ 15.3
USP48-206ENST00000464577 SSBP2P81877 361 aaPredicted RBP5.89□□□□□ -1.47
USP48-206ENST00000464577 MSMPQ1L6U9 139 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 TMEM177Q53S58 311 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 MUC21Q5SSG8 566 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 LDLRAD2Q5SZI1 272 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 LINC01545Q5VT33 79 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 LINC00173Q6ZV60 143 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 UBALD2Q8IYN6 164 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 C5orf17Q8NAS9 161 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 OR10W1Q8NGF6 305 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 TMEM167AQ8TBQ9 72 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 GTSF1Q8WW33 167 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 TMEM190Q8WZ59 177 aa5.89□□□□□ -1.47
USP48-206ENST00000464577 PEF1Q9UBV8 284 aaKnown RBP5.89□□□□□ -1.47
USP48-206ENST00000464577 CACNA1DQ01668 2161 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 A0A1W2PNU3 283 aaPredicted RBP5.88□□□□□ -1.47
USP48-206ENST00000464577 PRR33A8MZF0 331 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 NPIPB6E9PJ23 425 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 MOSP00540 346 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 FOXA3P55318 350 aaPredicted RBP5.88□□□□□ -1.47
USP48-206ENST00000464577 SEC11AP67812 179 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 ETFRF1Q6IPR1 90 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 ZCCHC24Q8N2G6 241 aaKnown RBP5.88□□□□□ -1.47
USP48-206ENST00000464577 C9orf106Q8NAJ2 232 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 GATD1Q8NB37 220 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 VSTM2AQ8TAG5 236 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 ITLN1Q8WWA0 313 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 DPF1Q92782 380 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 HARBI1Q96MB7 349 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 DOCK7Q96N67 2140 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 GAFA1Q96PS6 74 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 VPS25Q9BRG1 176 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 FNDC4Q9H6D8 234 aaPredicted RBP5.88□□□□□ -1.47
USP48-206ENST00000464577 PLSCR4Q9NRQ2 329 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 TP73-AS1Q9UF72 201 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 TRIOO75962 3097 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 SPEGQ15772 3267 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 CEP290O15078 2479 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 DNAJC13O75165 2243 aa5.88□□□□□ -1.47
USP48-206ENST00000464577 PGPA6NDG6 321 aa5.87□□□□□ -1.47
USP48-206ENST00000464577 K7ERU9 68 aa5.87□□□□□ -1.47
USP48-206ENST00000464577 CHEK1O14757 476 aa5.87□□□□□ -1.47
USP48-206ENST00000464577 COX8AP10176 69 aa5.87□□□□□ -1.47
USP48-206ENST00000464577 GPR183P32249 361 aa5.87□□□□□ -1.47
USP48-206ENST00000464577 PSG9Q00887 426 aa5.87□□□□□ -1.47
USP48-206ENST00000464577 SPRNQ5BIV9 151 aa5.87□□□□□ -1.47
USP48-206ENST00000464577 AMMECR1LQ6DCA0 310 aa5.87□□□□□ -1.47
USP48-206ENST00000464577 C16orf54Q6UWD8 224 aa5.87□□□□□ -1.47
USP48-206ENST00000464577 LINC00322Q6ZN03 302 aaPredicted RBP5.87□□□□□ -1.47
USP48-206ENST00000464577 BHLHA15Q7RTS1 189 aaPredicted RBP5.87□□□□□ -1.47
USP48-206ENST00000464577 LINC00305Q7Z4B0 112 aa5.87□□□□□ -1.47
USP48-206ENST00000464577 RBMXL3Q8N7X1 1067 aaKnown RBP5.87□□□□□ -1.47
USP48-206ENST00000464577 OR5AN1Q8NGI8 311 aa5.87□□□□□ -1.47
USP48-206ENST00000464577 NPIPB3Q92617 1050 aa5.87□□□□□ -1.47
USP48-206ENST00000464577 PGLYRP4Q96LB8 373 aa5.87□□□□□ -1.47
USP48-206ENST00000464577 MRPL20Q9BYC9 149 aaKnown RBP5.87□□□□□ -1.47
USP48-206ENST00000464577 RNF7Q9UBF6 113 aa5.87□□□□□ -1.47
USP48-206ENST00000464577 SLC25A15Q9Y619 301 aa5.87□□□□□ -1.47
USP48-206ENST00000464577 TRBV6-1A0A0K0K1D8 114 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms