RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 FMODQ06828 376 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 RAB31Q13636 194 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 CDK10Q15131 360 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 BCL2A1Q16548 175 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 CEACAM21Q3KPI0 293 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 SLC36A2Q495M3 483 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 CLVS2Q5SYC1 327 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 GLYATL3Q5SZD4 288 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 C10orf128Q5T292 105 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 FAM27BQ5VT28 67 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 DRAM2Q6UX65 266 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 AAED1Q7RTV5 226 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 C1orf174Q8IYL3 243 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 BOD1L2Q8IYS8 172 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 SPICQ8N5J4 248 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 ZNF283Q8N7M2 679 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 GATD1Q8NB37 220 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 OR5L1Q8NGL2 311 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 OR5H2Q8NGV7 314 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 RNF133Q8WVZ7 376 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 SLAMF6Q96DU3 332 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 MRPS24Q96EL2 167 aaKnown RBP2.22□□□□□ -2.05
VPS41-210ENST00000462429 ARL5BQ96KC2 179 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 GPER1Q99527 375 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 PRRT1Q99946 306 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 SEC22CQ9BRL7 303 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 PBOV1Q9GZY1 135 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 ATG5Q9H1Y0 275 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 MIXL1Q9H2W2 232 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 METTL17Q9H7H0 456 aaPredicted RBP2.22□□□□□ -2.05
VPS41-210ENST00000462429 VSIRQ9H7M9 311 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 RNF122Q9H9V4 155 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 SPACA1Q9HBV2 294 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 ATPIF1Q9UII2 106 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 FBXL3Q9UKT7 428 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 SLC22A13Q9Y226 551 aa2.22□□□□□ -2.05
VPS41-210ENST00000462429 C5orf42Q9H799 3197 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 MPDZO75970 2070 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 ZNF736B4DX44 427 aaPredicted RBP2.21□□□□□ -2.06
VPS41-210ENST00000462429 C9JQL5 133 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 F5H5K5 113 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 H7C1C5 153 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 M0QXV9 152 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 ISLRO14498 428 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 PLA2G10O15496 165 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 EEF1E1O43324 174 aaKnown RBP2.21□□□□□ -2.06
VPS41-210ENST00000462429 SSNA1O43805 119 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 IGHV1-46P01743 117 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 C1QBP02746 253 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 IGLV7-43P04211 117 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 IL5P05113 134 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 CST2P09228 141 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 CCL3P10147 92 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 COX5BP10606 129 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 GTF2F2P13984 249 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 GABRA1P14867 456 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 ATF1P18846 271 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 S100A1P23297 94 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 CDK2P24941 298 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 S100GP29377 79 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 CD79BP40259 229 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 RAB14P61106 215 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 RPS11P62280 158 aaKnown RBP eCLIP2.21□□□□□ -2.06
VPS41-210ENST00000462429 LCN6P62502 163 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 HBG1P69891 147 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 HBG2P69892 147 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 CD164Q04900 197 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 USF2Q15853 346 aaPredicted RBP2.21□□□□□ -2.06
VPS41-210ENST00000462429 HIST3H3Q16695 136 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 HES3Q5TGS1 186 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 LPCAT3Q6P1A2 487 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 C16orf47Q6ZP98 133 aaPredicted RBP2.21□□□□□ -2.06
VPS41-210ENST00000462429 ZNF767PQ75MW2 155 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 SSX8Q7RTT4 187 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 ANGPTL5Q86XS5 388 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 SNX29P2Q8IUI4 249 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 TCTE3Q8IZS6 198 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 OR1M1Q8NGA1 313 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 OR51D1Q8NGF3 324 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 OR51A2Q8NGJ7 313 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 OR1P1Q8NH06 330 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 OR8S1Q8NH09 359 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 OR10D3Q8NH80 312 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 OR2V1Q8NHB1 315 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 CT55Q8WUE5 264 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 C11orf40Q8WZ69 217 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 SLC7A6Q92536 515 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 YIPF5Q969M3 257 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 TTTY10Q9BZA0 68 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 LINC00470Q9BZP3 86 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 ALX4Q9H161 411 aaPredicted RBP2.21□□□□□ -2.06
VPS41-210ENST00000462429 RHOFQ9HBH0 211 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 MED29Q9NX70 200 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 COMMD9Q9P000 198 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 OR5V1Q9UGF6 321 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 NOSIPQ9Y314 301 aaKnown RBP2.21□□□□□ -2.06
VPS41-210ENST00000462429 NOP16Q9Y3C1 178 aaKnown RBP2.21□□□□□ -2.06
VPS41-210ENST00000462429 URGCP-MRPS24S4R325 110 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 KNTC1P50748 2209 aa2.21□□□□□ -2.06
VPS41-210ENST00000462429 TNRC6BQ9UPQ9 1833 aaKnown RBP2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms