RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 TMEM78Q5T7P6 136 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 WFDC8Q8IUA0 241 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 OR11H1Q8NG94 326 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 OR11H2Q8NH07 326 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 RALYQ9UKM9 306 aaKnown RBP5.8□□□□□ -1.48
SYNE1-216ENST00000461872 SAA1P0DJI8 122 aaPredicted RBP5.8□□□□□ -1.48
SYNE1-216ENST00000461872 MDKP21741 143 aaPredicted RBP5.8□□□□□ -1.48
SYNE1-216ENST00000461872 MIR17HGQ75NE6 70 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 ZCCHC24Q8N2G6 241 aaKnown RBP5.8□□□□□ -1.48
SYNE1-216ENST00000461872 DEFB108BQ8NET1 73 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 AURKAIP1Q9NWT8 199 aaPredicted RBP5.8□□□□□ -1.48
SYNE1-216ENST00000461872 SCGB1A1P11684 91 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 TPTE2P1Q5T6R2 138 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 ITLN1Q8WWA0 313 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 DEPPQ9NTK1 212 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 IGHV2-26A0A0B4J1V2 119 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 S100A4P26447 101 aaKnown RBP5.8□□□□□ -1.48
SYNE1-216ENST00000461872 RRHO14718 337 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 COL9A2Q14055 689 aaPredicted RBP5.8□□□□□ -1.48
SYNE1-216ENST00000461872 PRELID3AQ96N28 172 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 JKAMPQ9P055 326 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 NOTCH3Q9UM47 2321 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 GNG10P50151 68 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 PRR20EP86478 221 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 PRR20CP86479 221 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 PRR20DP86480 221 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 PRR20BP86481 221 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 PRR20AP86496 221 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 C18orf32Q8TCD1 76 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 SP9P0CG40 484 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 SPANXCQ9NY87 97 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 TAL2Q16559 108 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 CR1LQ2VPA4 569 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 TTC9CQ8N5M4 171 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 NPIPB3Q92617 1050 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 SLC17A3O00476 420 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 TCRAP04437 139 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 C3orf79P0CE67 100 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 IGHV1-2P23083 117 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 PTPRSQ13332 1948 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 TNRC6BQ9UPQ9 1833 aaKnown RBP5.79□□□□□ -1.48
SYNE1-216ENST00000461872 DLX6P56179 175 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 IZUMO4Q1ZYL8 232 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 RPL39P5Q59GN2 51 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 ZNF114Q8NC26 417 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 DERL1Q9BUN8 251 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 Q9H3A6 140 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 ZNF785A8K8V0 405 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 M0QZ24 198 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 PAX1P15863 534 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 IGKV1-39P01597 117 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 IGKV1D-39P04432 117 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 PLNP26678 52 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 THAP8Q8NA92 274 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 FAM222BQ8WU58 562 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 ZXDAP98168 799 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 COQ2Q96H96 371 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 LOC102724200A0A096LPH7 203 aaPredicted RBP5.79□□□□□ -1.48
SYNE1-216ENST00000461872 PAX2Q02962 417 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 METTL26Q96S19 204 aa5.79□□□□□ -1.48
SYNE1-216ENST00000461872 SEPSECSQ9HD40 501 aaKnown RBP5.79□□□□□ -1.48
SYNE1-216ENST00000461872 ID1P41134 155 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 ZNF826PQ6ZT77 177 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 BCL6BQ8N143 479 aaPredicted RBP5.78□□□□□ -1.48
SYNE1-216ENST00000461872 GDF9O60383 454 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 NDUFB8O95169 186 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 CDKN1BP46527 198 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 OR2K2Q8NGT1 345 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 ARRDC1-AS1Q9H2J1 176 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 MBD3L4A6NDZ8 208 aaPredicted RBP5.78□□□□□ -1.48
SYNE1-216ENST00000461872 MBD3L3A6NE82 208 aaPredicted RBP5.78□□□□□ -1.48
SYNE1-216ENST00000461872 MBD3L5A6NJ08 208 aaPredicted RBP5.78□□□□□ -1.48
SYNE1-216ENST00000461872 FAM106CPP0CH98 169 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 TMEM256Q8N2U0 113 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 OR8A1Q8NGG7 326 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 MBD3L2Q8NHZ7 208 aaPredicted RBP5.78□□□□□ -1.48
SYNE1-216ENST00000461872 NBASA2RRP1 2371 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 A0A0G2JRQ6 117 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 MYF5P13349 255 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 ST6GALNAC3Q8NDV1 305 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 EML6Q6ZMW3 1958 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 EREGO14944 169 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 PSPNO60542 156 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 CEBPDP49716 269 aaPredicted RBP5.78□□□□□ -1.48
SYNE1-216ENST00000461872 SPATA12Q7Z6I5 190 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 ATP6V0BQ99437 205 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 LINC00574Q9H8X3 128 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 HAX1O00165 279 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 PRNTQ86SH4 94 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 NUDT10Q8NFP7 164 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 NUDT11Q96G61 164 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 TDGF1P13385 188 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 LINC01545Q5VT33 79 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 KLHDC3Q9BQ90 382 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 COX6CP09669 75 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 FXYD3Q14802 87 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 NUP35Q8NFH5 326 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 SRSF12Q8WXF0 261 aaKnown RBP5.78□□□□□ -1.48
SYNE1-216ENST00000461872 CCL13Q99616 98 aa5.78□□□□□ -1.48
SYNE1-216ENST00000461872 TMEM133Q9H2Q1 129 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms