RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 LINC00854A0A1B0GVQ3 168 aa13.81□□□□□ -0.2
HOXD3-204ENST00000459979 PLA2G10O15496 165 aa13.81□□□□□ -0.2
HOXD3-204ENST00000459979 CD5P06127 495 aa13.81□□□□□ -0.2
HOXD3-204ENST00000459979 RNF2Q99496 336 aa13.81□□□□□ -0.2
HOXD3-204ENST00000459979 FAM110AQ9BQ89 295 aa13.81□□□□□ -0.2
HOXD3-204ENST00000459979 VSIRQ9H7M9 311 aa13.81□□□□□ -0.2
HOXD3-204ENST00000459979 SRD5A3Q9H8P0 318 aa13.81□□□□□ -0.2
HOXD3-204ENST00000459979 RBMY1BA6NDE4 496 aaKnown RBP13.8□□□□□ -0.2
HOXD3-204ENST00000459979 RBMY1EA6NEQ0 496 aaKnown RBP13.8□□□□□ -0.2
HOXD3-204ENST00000459979 IFNA10P01566 189 aa13.8□□□□□ -0.2
HOXD3-204ENST00000459979 OR4E1P0C645 316 aa13.8□□□□□ -0.2
HOXD3-204ENST00000459979 RBMY1DP0C7P1 496 aaKnown RBP13.8□□□□□ -0.2
HOXD3-204ENST00000459979 IGLC1P0CG04 106 aa13.8□□□□□ -0.2
HOXD3-204ENST00000459979 BMI1P35226 326 aa13.8□□□□□ -0.2
HOXD3-204ENST00000459979 DHRS2Q13268 280 aa13.8□□□□□ -0.2
HOXD3-204ENST00000459979 FAM90A2PQ658T7 463 aa13.8□□□□□ -0.2
HOXD3-204ENST00000459979 OR1S2Q8NGQ3 325 aa13.8□□□□□ -0.2
HOXD3-204ENST00000459979 SPATA25Q9BR10 227 aa13.8□□□□□ -0.2
HOXD3-204ENST00000459979 CCDC32Q9BV29 185 aa13.8□□□□□ -0.2
HOXD3-204ENST00000459979 WFDC10AQ9H1F0 79 aa13.8□□□□□ -0.2
HOXD3-204ENST00000459979 FLVCR2Q9UPI3 526 aa13.8□□□□□ -0.2
HOXD3-204ENST00000459979 OR4C46A6NHA9 309 aa13.79□□□□□ -0.2
HOXD3-204ENST00000459979 MED6O75586 246 aa13.79□□□□□ -0.2
HOXD3-204ENST00000459979 RND2P52198 227 aa13.79□□□□□ -0.2
HOXD3-204ENST00000459979 YPEL3P61236 119 aaPredicted RBP13.79□□□□□ -0.2
HOXD3-204ENST00000459979 GGNBP1Q5YKI7 109 aa13.79□□□□□ -0.2
HOXD3-204ENST00000459979 LYG2Q86SG7 212 aa13.79□□□□□ -0.2
HOXD3-204ENST00000459979 LYRM1O43325 122 aa13.78□□□□□ -0.2
HOXD3-204ENST00000459979 HOXB5P09067 269 aa13.78□□□□□ -0.2
HOXD3-204ENST00000459979 GPX4P36969 197 aaPredicted RBP13.78□□□□□ -0.2
HOXD3-204ENST00000459979 TIGITQ495A1 244 aa13.78□□□□□ -0.2
HOXD3-204ENST00000459979 COQ8AQ8NI60 647 aa13.78□□□□□ -0.2
HOXD3-204ENST00000459979 DNAH1Q9P2D7 4330 aa13.78□□□□□ -0.2
HOXD3-204ENST00000459979 IGHV3-49A0A0A0MS15 119 aa13.77□□□□□ -0.21
HOXD3-204ENST00000459979 CRYBB3P26998 211 aa13.77□□□□□ -0.21
HOXD3-204ENST00000459979 OR10J1P30954 320 aa13.77□□□□□ -0.21
HOXD3-204ENST00000459979 S100ZQ8WXG8 99 aa13.77□□□□□ -0.21
HOXD3-204ENST00000459979 CIB3Q96Q77 187 aaPredicted RBP13.77□□□□□ -0.21
HOXD3-204ENST00000459979 RETNQ9HD89 108 aa13.77□□□□□ -0.21
HOXD3-204ENST00000459979 A0A1W2PS18 150 aa13.76□□□□□ -0.21
HOXD3-204ENST00000459979 SYNGR2O43760 224 aa13.76□□□□□ -0.21
HOXD3-204ENST00000459979 APOHP02749 345 aaPredicted RBP13.76□□□□□ -0.21
HOXD3-204ENST00000459979 IFNA4P05014 189 aa13.76□□□□□ -0.21
HOXD3-204ENST00000459979 ANXA7P20073 488 aaKnown RBP13.76□□□□□ -0.21
HOXD3-204ENST00000459979 NPPCP23582 126 aa13.76□□□□□ -0.21
HOXD3-204ENST00000459979 CMC4P56277 68 aaPredicted RBP13.76□□□□□ -0.21
HOXD3-204ENST00000459979 ID3Q02535 119 aa13.76□□□□□ -0.21
HOXD3-204ENST00000459979 ODF3L2Q3SX64 289 aa13.76□□□□□ -0.21
HOXD3-204ENST00000459979 LILRB2Q8N423 598 aa13.76□□□□□ -0.21
HOXD3-204ENST00000459979 Q8WTZ3 238 aa13.76□□□□□ -0.21
HOXD3-204ENST00000459979 ST8SIA2Q92186 375 aa13.76□□□□□ -0.21
HOXD3-204ENST00000459979 NPIPB3Q92617 1050 aa13.76□□□□□ -0.21
HOXD3-204ENST00000459979 METTL26Q96S19 204 aa13.76□□□□□ -0.21
HOXD3-204ENST00000459979 TMEM231Q9H6L2 316 aa13.76□□□□□ -0.21
HOXD3-204ENST00000459979 IGHV3OR16-13A0A075B7E8 117 aa13.75□□□□□ -0.21
HOXD3-204ENST00000459979 IGHV3-74A0A0B4J1X5 117 aa13.75□□□□□ -0.21
HOXD3-204ENST00000459979 ADAP1O75689 374 aa13.75□□□□□ -0.21
HOXD3-204ENST00000459979 C4orf46Q504U0 113 aa13.75□□□□□ -0.21
HOXD3-204ENST00000459979 TCF24Q7RTU0 167 aa13.75□□□□□ -0.21
HOXD3-204ENST00000459979 MITD1Q8WV92 249 aa13.75□□□□□ -0.21
HOXD3-204ENST00000459979 U3KQE9 123 aa13.75□□□□□ -0.21
HOXD3-204ENST00000459979 HYDINQ4G0P3 5121 aa13.74□□□□□ -0.21
HOXD3-204ENST00000459979 LOC102724200A0A096LPH7 203 aaPredicted RBP13.74□□□□□ -0.21
HOXD3-204ENST00000459979 TRAV2A0A0B4J234 112 aa13.74□□□□□ -0.21
HOXD3-204ENST00000459979 IFNA21P01568 189 aa13.74□□□□□ -0.21
HOXD3-204ENST00000459979 TCRBP04435 133 aa13.74□□□□□ -0.21
HOXD3-204ENST00000459979 RAB11AP62491 216 aa13.74□□□□□ -0.21
HOXD3-204ENST00000459979 PAFAH1B2P68402 229 aa13.74□□□□□ -0.21
HOXD3-204ENST00000459979 RPP30P78346 268 aaKnown RBP13.74□□□□□ -0.21
HOXD3-204ENST00000459979 ACY3Q96HD9 319 aa13.74□□□□□ -0.21
HOXD3-204ENST00000459979 GGTLC1Q9BX51 225 aa13.74□□□□□ -0.21
HOXD3-204ENST00000459979 C20orf85Q9H1P6 137 aa13.74□□□□□ -0.21
HOXD3-204ENST00000459979 DFFBO76075 338 aa13.73□□□□□ -0.21
HOXD3-204ENST00000459979 TOMM40O96008 361 aa13.73□□□□□ -0.21
HOXD3-204ENST00000459979 IAPPP10997 89 aa13.73□□□□□ -0.21
HOXD3-204ENST00000459979 GAMTQ14353 236 aa13.73□□□□□ -0.21
HOXD3-204ENST00000459979 OR4D5Q8NGN0 318 aa13.73□□□□□ -0.21
HOXD3-204ENST00000459979 MPTX1A8MV57 137 aa13.72□□□□□ -0.21
HOXD3-204ENST00000459979 RD3LP0DJH9 198 aa13.72□□□□□ -0.21
HOXD3-204ENST00000459979 MAGT1Q9H0U3 335 aa13.72□□□□□ -0.21
HOXD3-204ENST00000459979 PTTG2Q9NZH5 202 aa13.72□□□□□ -0.21
HOXD3-204ENST00000459979 UBQLN2Q9UHD9 624 aa13.72□□□□□ -0.21
HOXD3-204ENST00000459979 IGKV1D-37A0A075B6S9 117 aa13.71□□□□□ -0.21
HOXD3-204ENST00000459979 PRSS46E5RG02 174 aa13.71□□□□□ -0.21
HOXD3-204ENST00000459979 WRBO00258 174 aa13.71□□□□□ -0.21
HOXD3-204ENST00000459979 NARS2Q96I59 477 aaKnown RBP13.71□□□□□ -0.21
HOXD3-204ENST00000459979 SLC35E1Q96K37 410 aa13.71□□□□□ -0.21
HOXD3-204ENST00000459979 MS4A6AQ9H2W1 248 aa13.71□□□□□ -0.21
HOXD3-204ENST00000459979 IGHV3-66A0A0C4DH42 116 aa13.7□□□□□ -0.22
HOXD3-204ENST00000459979 IL4P05112 153 aa13.7□□□□□ -0.22
HOXD3-204ENST00000459979 HNRNPCP07910 306 aaKnown RBP eCLIP13.7□□□□□ -0.22
HOXD3-204ENST00000459979 PSG1P11464 419 aa13.7□□□□□ -0.22
HOXD3-204ENST00000459979 NKX2-1P43699 371 aaPredicted RBP13.7□□□□□ -0.22
HOXD3-204ENST00000459979 P2RY1P47900 373 aa13.7□□□□□ -0.22
HOXD3-204ENST00000459979 USF2Q15853 346 aaPredicted RBP13.7□□□□□ -0.22
HOXD3-204ENST00000459979 GRAMD2BQ96HH9 432 aa13.7□□□□□ -0.22
HOXD3-204ENST00000459979 BATF3Q9NR55 127 aa13.7□□□□□ -0.22
HOXD3-204ENST00000459979 KIR2DL5BA0A0G2JN68 375 aa13.69□□□□□ -0.22
HOXD3-204ENST00000459979 KIR2DL5BA0A0G2JPC4 375 aa13.69□□□□□ -0.22
HOXD3-204ENST00000459979 POLR2GP62487 172 aaKnown RBP eCLIP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms