RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 SCARB1Q8WTV0 552 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 OR5B12Q96R08 314 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 OR4C12Q96R67 309 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 C11orf1Q9H5F2 150 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 LYRM2Q9NU23 88 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-214ENST00000454018 C21orf62Q9NYP8 219 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 VWFP04275 2813 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 E5RGE8 158 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 SCGB2A1O75556 95 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 MPC2O95563 127 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 SLC25A4P12235 298 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 CAV2P51636 162 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 PAX9P55771 341 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 FGL1Q08830 312 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 ZNF616Q08AN1 781 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 DEFB136Q30KP8 78 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 TMEM14EPQ6UXP3 125 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 SLC16A13Q7RTY0 426 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 CACNG8Q8WXS5 425 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 BSCL2Q96G97 398 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-214ENST00000454018 TXN2Q99757 166 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 FNDC4Q9H6D8 234 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-214ENST00000454018 RANGRFQ9HD47 186 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-214ENST00000454018 PEF1Q9UBV8 284 aaKnown RBP6.76□□□□□ -1.33
SYNE1-214ENST00000454018 PAIP2BQ9ULR5 123 aaKnown RBP6.76□□□□□ -1.33
SYNE1-214ENST00000454018 NOTCH3Q9UM47 2321 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 PRSS46E5RG02 174 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 LINC01619G3V211 115 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 CCL24O00175 119 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 HSPB1P04792 205 aaKnown RBP6.75□□□□□ -1.33
SYNE1-214ENST00000454018 ZP3P21754 424 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 GPR183P32249 361 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 MYCNOSP40205 109 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 P2RY1P47900 373 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 NPBWR1P48145 328 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 MFAP4P55083 255 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 Q56UQ5 140 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 PRSS54Q6PEW0 395 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 SPSB3Q6PJ21 355 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 CLEC19AQ6UXS0 136 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 STX12Q86Y82 276 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 OR11H1Q8NG94 326 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 DCUN1D4Q92564 292 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 NEU1Q99519 415 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 MBD2Q9UBB5 411 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 S4R3C0 116 aa6.75□□□□□ -1.33
SYNE1-214ENST00000454018 IGHV4OR15-8A0A075B7B6 117 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 A0A087WW49 117 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 IGHV3-21A0A0B4J1V1 117 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 BMPR1BO00238 502 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 TGOLN2O43493 480 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 GNG7O60262 68 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 TSPAN15O95858 294 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 TRBV12-3P01733 135 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 IGHV3-23P01764 117 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 METTL15P1P0C7V9 234 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 GPX4P36969 197 aaPredicted RBP6.74□□□□□ -1.33
SYNE1-214ENST00000454018 BCAP31P51572 246 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 RPEL1Q2QD12 228 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 OR8G2PQ6IF36 304 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 ACSM6Q6P461 480 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 ACOT7LQ6ZUV0 252 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 UBAC2Q8NBM4 344 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 TMEM116Q8NCL8 245 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 OR10P1Q8NGE3 313 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 OR1N2Q8NGR9 330 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 OR2T35Q8NGX2 323 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 OR4X1Q8NH49 305 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 THAP6Q8TBB0 222 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 DPF1Q92782 380 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 SLC35E1Q96K37 410 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 SLC25A31Q9H0C2 315 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 OR5AC2Q9NZP5 309 aa6.74□□□□□ -1.33
SYNE1-214ENST00000454018 TRAV30A0A087WSZ9 112 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 OR2T8A6NH00 312 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 PMS2P5A8MQ11 134 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 PPP5D1E7EU14 171 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 FNDC10F2Z333 226 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 H0YIZ8 118 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 NUPL2O15504 423 aaKnown RBP6.73□□□□□ -1.33
SYNE1-214ENST00000454018 GGCTO75223 188 aaKnown RBP6.73□□□□□ -1.33
SYNE1-214ENST00000454018 CLN5O75503 358 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 IGHV3-48P01763 117 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 LYL1P12980 280 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 HOXD3P31249 432 aaPredicted RBP6.73□□□□□ -1.33
SYNE1-214ENST00000454018 SULT1A1P50225 295 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 RND2P52198 227 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 HBG1P69891 147 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 HBG2P69892 147 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 DLK1P80370 383 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 BAXQ07812 192 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 FAM90A2PQ658T7 463 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 TMEM252Q8N6L7 170 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 GGACTQ9BVM4 153 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 PPP1R14DQ9NXH3 145 aa6.73□□□□□ -1.33
SYNE1-214ENST00000454018 TRAV14DV4A0A0A6YYC5 116 aa6.72□□□□□ -1.33
SYNE1-214ENST00000454018 IGSF23A1L1A6 192 aa6.72□□□□□ -1.33
SYNE1-214ENST00000454018 FAM24AA6NFZ4 105 aa6.72□□□□□ -1.33
SYNE1-214ENST00000454018 TIRAPP58753 221 aa6.72□□□□□ -1.33
SYNE1-214ENST00000454018 AKR1C1Q04828 323 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms