RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 HMGN4O00479 90 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 ZFAND5O76080 213 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 NDUFB2O95178 105 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 SLC25A14O95258 325 aaPredicted RBP5.27□□□□□ -1.57
MCF2-205ENST00000437564 CLDN14O95500 239 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 IGFBP3P17936 291 aaPredicted RBP5.27□□□□□ -1.57
MCF2-205ENST00000437564 HERV-K104P61576 105 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 RPL30P62888 115 aaKnown RBP5.27□□□□□ -1.57
MCF2-205ENST00000437564 FAM27E3Q08E93 113 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 EFEMP1Q12805 493 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 PMAIP1Q13794 54 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 HES3Q5TGS1 186 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 SPACA3Q8IXA5 215 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 AMN1Q8IY45 258 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 DEFB106AQ8N104 65 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 FAM57AQ8TBR7 257 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 NPIPB3Q92617 1050 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 UBE2E3Q969T4 207 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 LINC01600Q96MT4 127 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 NMNAT3Q96T66 252 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 WFDC6Q9BQY6 131 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 AGPAT4-IT1Q9H0P7 198 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 OSTCQ9NRP0 149 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 GTF3C1Q12789 2109 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 TCRBV4S1A1TA0A5B7 111 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 FAM90A10PA6NDY2 464 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 OBSL1O75147 1896 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 PDCD6O75340 191 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 CD7P09564 240 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 HOXB4P17483 251 aaPredicted RBP5.27□□□□□ -1.57
MCF2-205ENST00000437564 ZNF136P52737 540 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 FXYD2P54710 66 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 GNB1P62873 340 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 HBG1P69891 147 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 HBG2P69892 147 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 VGLL4Q14135 290 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 C12orf74Q32Q52 190 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 Q6ZQT7 251 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 Q71RC1 249 aaPredicted RBP5.27□□□□□ -1.57
MCF2-205ENST00000437564 AAED1Q7RTV5 226 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 TBC1D26Q86UD7 250 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 MEX3DQ86XN8 651 aaKnown RBP5.27□□□□□ -1.57
MCF2-205ENST00000437564 DOCK4Q8N1I0 1966 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 C3orf56Q8N813 242 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 TMEM255BQ8WV15 326 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 NHP2Q9NX24 153 aaKnown RBP5.27□□□□□ -1.57
MCF2-205ENST00000437564 V9GYV3 84 aa5.27□□□□□ -1.57
MCF2-205ENST00000437564 TRAV27A0A087WT01 109 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 SMIM27A0A1W2PRY6 76 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 CCL22O00626 93 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 PRNPP04156 253 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 P0DMU3 169 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 FAM231AP0DMU4 169 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 FAM231CP0DMU5 169 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 CRYGSP22914 178 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 NPPCP23582 126 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 LOXP28300 417 aaPredicted RBP5.26□□□□□ -1.57
MCF2-205ENST00000437564 SSR2P43308 183 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 FBXW4P57775 412 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 LGALS9BQ3B8N2 356 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 LGALS9CQ6DKI2 356 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 LYZL2Q7Z4W2 148 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 SLC25A45Q8N413 288 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 WDR31Q8NA23 367 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 Q96M66 194 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 IL36RNQ9UBH0 155 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 CACNG5Q9UF02 275 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 LAMTOR3Q9UHA4 124 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 TMEM14AQ9Y6G1 99 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 SCN2AQ99250 2005 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 KCPQ6ZWJ8 1503 aa5.26□□□□□ -1.57
MCF2-205ENST00000437564 TRAV8-4A0A0B4J246 113 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.25□□□□□ -1.57
MCF2-205ENST00000437564 LINC01619G3V211 115 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 FAM72CH0Y354 149 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 CHEK1O14757 476 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 SSSCA1O60232 199 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 NDUFB4O95168 129 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 EPPINO95925 133 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 PPYP01298 95 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 CCL23P55773 120 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 DLX1P56177 255 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 TRIP6Q15654 476 aaKnown RBP5.25□□□□□ -1.57
MCF2-205ENST00000437564 ZNF672Q499Z4 452 aaPredicted RBP5.25□□□□□ -1.57
MCF2-205ENST00000437564 FAM72AQ5TYM5 149 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 FAM72DQ6L9T8 149 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.25□□□□□ -1.57
MCF2-205ENST00000437564 FAM72BQ86X60 149 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 RAB42Q8N4Z0 105 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 POM121L12Q8N7R1 296 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 TMEM158Q8WZ71 300 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 KRTAP9-2Q9BYQ4 174 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 FSCN3Q9NQT6 498 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 CDX4O14627 284 aaPredicted RBP5.25□□□□□ -1.57
MCF2-205ENST00000437564 CXCL13O43927 109 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 CST7O76096 145 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 IL4P05112 153 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 MGST1P10620 155 aaKnown RBP5.25□□□□□ -1.57
MCF2-205ENST00000437564 ABCA11PQ4W5N1 156 aa5.25□□□□□ -1.57
MCF2-205ENST00000437564 MFSD12Q6NUT3 480 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms