RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 SOX21Q9Y651 276 aaPredicted RBP11□□□□□ -0.65
COL6A3-207ENST00000433762 IGLC7A0M8Q6 106 aa10.99□□□□□ -0.65
COL6A3-207ENST00000433762 OR2J3O76001 311 aa10.99□□□□□ -0.65
COL6A3-207ENST00000433762 APCSP02743 223 aa10.99□□□□□ -0.65
COL6A3-207ENST00000433762 KLF5Q13887 457 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-207ENST00000433762 MRGPRG-AS1Q2M3A8 158 aa10.99□□□□□ -0.65
COL6A3-207ENST00000433762 MORN5Q5VZ52 161 aa10.99□□□□□ -0.65
COL6A3-207ENST00000433762 H1FXQ92522 213 aaKnown RBP10.99□□□□□ -0.65
COL6A3-207ENST00000433762 NEU1Q99519 415 aa10.99□□□□□ -0.65
COL6A3-207ENST00000433762 SRSF8Q9BRL6 282 aaKnown RBP10.99□□□□□ -0.65
COL6A3-207ENST00000433762 TMEM133Q9H2Q1 129 aa10.99□□□□□ -0.65
COL6A3-207ENST00000433762 C7orf69Q9H7B7 122 aa10.99□□□□□ -0.65
COL6A3-207ENST00000433762 ZNF253O75346 499 aa10.99□□□□□ -0.65
COL6A3-207ENST00000433762 ZNF324O75467 553 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-207ENST00000433762 CRYGBP07316 175 aa10.99□□□□□ -0.65
COL6A3-207ENST00000433762 FXYD3Q14802 87 aa10.99□□□□□ -0.65
COL6A3-207ENST00000433762 FAM162BQ5T6X4 162 aa10.99□□□□□ -0.65
COL6A3-207ENST00000433762 CYB5R2Q6BCY4 276 aa10.99□□□□□ -0.65
COL6A3-207ENST00000433762 TSKUQ8WUA8 353 aa10.99□□□□□ -0.65
COL6A3-207ENST00000433762 RNF5Q99942 180 aa10.99□□□□□ -0.65
COL6A3-207ENST00000433762 TRAV5A0A0B4J249 113 aa10.98□□□□□ -0.65
COL6A3-207ENST00000433762 CASP6P55212 293 aa10.98□□□□□ -0.65
COL6A3-207ENST00000433762 SCNM1Q9BWG6 230 aa10.98□□□□□ -0.65
COL6A3-207ENST00000433762 TNFRSF19Q9NS68 423 aa10.98□□□□□ -0.65
COL6A3-207ENST00000433762 CBLN4Q9NTU7 201 aa10.98□□□□□ -0.65
COL6A3-207ENST00000433762 ZNF492Q9P255 531 aa10.98□□□□□ -0.65
COL6A3-207ENST00000433762 CTSZQ9UBR2 303 aa10.98□□□□□ -0.65
COL6A3-207ENST00000433762 SPTBN2O15020 2390 aa10.98□□□□□ -0.65
COL6A3-207ENST00000433762 A0A1W2PS18 150 aa10.98□□□□□ -0.65
COL6A3-207ENST00000433762 K7EM74 188 aa10.98□□□□□ -0.65
COL6A3-207ENST00000433762 DMRTA1Q5VZB9 504 aa10.98□□□□□ -0.65
COL6A3-207ENST00000433762 LINC00305Q7Z4B0 112 aa10.98□□□□□ -0.65
COL6A3-207ENST00000433762 EPDR1Q9UM22 224 aa10.98□□□□□ -0.65
COL6A3-207ENST00000433762 TBL2Q9Y4P3 447 aaKnown RBP10.98□□□□□ -0.65
COL6A3-207ENST00000433762 SLC25A17O43808 307 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 FRMD6-AS1P0C7T7 363 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 RNF224P0DH78 156 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 SRIP30626 198 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 RPL27AP46776 148 aaKnown RBP10.97□□□□□ -0.65
COL6A3-207ENST00000433762 REG1BP48304 166 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 PRRX1P54821 245 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 SSBP2P81877 361 aaPredicted RBP10.97□□□□□ -0.65
COL6A3-207ENST00000433762 LYPD2Q6UXB3 125 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 C11orf42Q8N5U0 333 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 C5orf17Q8NAS9 161 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 FMC1Q96HJ9 113 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 NRN1Q9NPD7 142 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 SERTAD4Q9NUC0 356 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 FBXL7Q9UJT9 491 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 FAM231BA6NCW3 169 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 TCAPO15273 167 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 KLK10O43240 276 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 PYYP10082 97 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 AMTP48728 403 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 UBE2G1P62253 170 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 Q8N976 141 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 NUDT10Q8NFP7 164 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 CCL17Q92583 94 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 NUDT11Q96G61 164 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 GPR82Q96P67 336 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 ATG101Q9BSB4 218 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 MLST8Q9BVC4 326 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 CELSR3Q9NYQ7 3312 aa10.97□□□□□ -0.65
COL6A3-207ENST00000433762 TRBV6-1A0A0K0K1D8 114 aa10.96□□□□□ -0.65
COL6A3-207ENST00000433762 SHISA9B4DS77 424 aa10.96□□□□□ -0.65
COL6A3-207ENST00000433762 F2Z2F3 143 aa10.96□□□□□ -0.65
COL6A3-207ENST00000433762 TOMM40O96008 361 aa10.96□□□□□ -0.65
COL6A3-207ENST00000433762 COL8A2P25067 703 aa10.96□□□□□ -0.65
COL6A3-207ENST00000433762 CDKN1AP38936 164 aa10.96□□□□□ -0.65
COL6A3-207ENST00000433762 C10orf55Q5SWW7 151 aa10.96□□□□□ -0.65
COL6A3-207ENST00000433762 GFRA4Q9GZZ7 299 aa10.96□□□□□ -0.65
COL6A3-207ENST00000433762 DYNLRB1Q9NP97 96 aa10.96□□□□□ -0.65
COL6A3-207ENST00000433762 TMEM14CQ9P0S9 112 aa10.96□□□□□ -0.65
COL6A3-207ENST00000433762 A0A1B0GXF2 115 aa10.96□□□□□ -0.66
COL6A3-207ENST00000433762 B9A039 149 aa10.96□□□□□ -0.66
COL6A3-207ENST00000433762 DIRC3C9JPN6 131 aa10.96□□□□□ -0.66
COL6A3-207ENST00000433762 HYPMO75409 117 aa10.96□□□□□ -0.66
COL6A3-207ENST00000433762 IGLV1-47P01700 117 aa10.96□□□□□ -0.66
COL6A3-207ENST00000433762 MRPL54Q6P161 138 aaKnown RBP10.96□□□□□ -0.66
COL6A3-207ENST00000433762 NUP35Q8NFH5 326 aa10.96□□□□□ -0.66
COL6A3-207ENST00000433762 C8orf46Q8TAG6 207 aa10.96□□□□□ -0.66
COL6A3-207ENST00000433762 C18orf32Q8TCD1 76 aa10.96□□□□□ -0.66
COL6A3-207ENST00000433762 VN1R17PQ8TDU5 208 aa10.96□□□□□ -0.66
COL6A3-207ENST00000433762 ICE1Q9Y2F5 2266 aa10.95□□□□□ -0.66
COL6A3-207ENST00000433762 C22orf46C9J442 243 aa10.95□□□□□ -0.66
COL6A3-207ENST00000433762 APOBEC3AP31941 199 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-207ENST00000433762 CTRLP40313 264 aa10.95□□□□□ -0.66
COL6A3-207ENST00000433762 TCL1AP56279 114 aa10.95□□□□□ -0.66
COL6A3-207ENST00000433762 DIAPH2-AS1Q14236 149 aa10.95□□□□□ -0.66
COL6A3-207ENST00000433762 DMRTC2Q8IXT2 367 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-207ENST00000433762 PRSS22Q9GZN4 317 aa10.95□□□□□ -0.66
COL6A3-207ENST00000433762 PRRC2CQ9Y520 2896 aaKnown RBP10.95□□□□□ -0.66
COL6A3-207ENST00000433762 F11RQ9Y624 299 aaKnown RBP10.95□□□□□ -0.66
COL6A3-207ENST00000433762 IGHV1-69-2A0A0G2JMI3 117 aa10.95□□□□□ -0.66
COL6A3-207ENST00000433762 NBEAP1P0C6P0 100 aa10.95□□□□□ -0.66
COL6A3-207ENST00000433762 GP9P14770 177 aa10.95□□□□□ -0.66
COL6A3-207ENST00000433762 GFRALQ6UXV0 394 aa10.95□□□□□ -0.66
COL6A3-207ENST00000433762 TMEM68Q96MH6 324 aa10.95□□□□□ -0.66
COL6A3-207ENST00000433762 MRPL36Q9P0J6 103 aaKnown RBP10.95□□□□□ -0.66
COL6A3-207ENST00000433762 RALYQ9UKM9 306 aaKnown RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms