RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 PPIAL4GP0DN37 164 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 RPL8P62917 257 aaKnown RBP6.75□□□□□ -1.33
CD44-208ENST00000428726 ADORA2A-AS1P86434 159 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 MUC21Q5SSG8 566 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 IGFL4Q6B9Z1 124 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 CYP2G1PQ6ZSU1 146 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 SLC25A48Q6ZT89 311 aaKnown RBP6.75□□□□□ -1.33
CD44-208ENST00000428726 MAPK1IP1LQ8NDC0 245 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 VN1R17PQ8TDU5 208 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 SLC25A33Q9BSK2 321 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 SRD5A3Q9H8P0 318 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 NPVFQ9HCQ7 196 aa6.75□□□□□ -1.33
CD44-208ENST00000428726 ANKRD17O75179 2603 aaKnown RBP6.75□□□□□ -1.33
CD44-208ENST00000428726 A8MWP6 167 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 C22orf46C9J442 243 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 TGOLN2O43493 480 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 APOA2P02652 100 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 TMEM249Q2WGJ8 235 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 PQLC2Q6ZP29 291 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 ERASQ7Z444 233 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 RAB1CQ92928 201 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 MS4A10Q96PG2 267 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 TBX15Q96SF7 602 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 FOXA2Q9Y261 457 aaPredicted RBP6.74□□□□□ -1.33
CD44-208ENST00000428726 PRSS46E5RG02 174 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 UPK2O00526 184 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 RBP4P02753 201 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 ADMP35318 185 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 IER3P46695 156 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 RBPJQ06330 500 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 JOSD1Q15040 202 aaPredicted RBP6.74□□□□□ -1.33
CD44-208ENST00000428726 POU2AF1Q16633 256 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 Q6ZVH6 145 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 NEIL1Q96FI4 390 aaPredicted RBP6.74□□□□□ -1.33
CD44-208ENST00000428726 KCNIP2Q9NS61 270 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 TMEM14BQ9NUH8 114 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 CHD6Q8TD26 2715 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 TRBV24-1A0A075B6N3 115 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 ELOA3CA0A087WX78 387 aaPredicted RBP6.74□□□□□ -1.33
CD44-208ENST00000428726 TRAV8-1A0A0A6YYK1 113 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 IGHV3-66A0A0C4DH42 116 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 A0A1W2PPI3 338 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 VSTM5A8MXK1 200 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 C19orf84I3L1E1 186 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 LINC00869P0C866 280 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 IGHV1-8P0DP01 117 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 ZNF25P17030 456 aaPredicted RBP6.74□□□□□ -1.33
CD44-208ENST00000428726 CNN1P51911 297 aaKnown RBP6.74□□□□□ -1.33
CD44-208ENST00000428726 HIST2H2BDQ6DRA6 164 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 MRPL54Q6P161 138 aaKnown RBP6.74□□□□□ -1.33
CD44-208ENST00000428726 LINC01551Q86U37 167 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 SNHG12Q9BXW3 62 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 GAL3ST2Q9H3Q3 398 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 FKBP11Q9NYL4 201 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 LINC00312Q9Y6C7 94 aa6.74□□□□□ -1.33
CD44-208ENST00000428726 CGB1A6NKQ9 187 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 TMEM11P17152 192 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 GNLYP22749 145 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 GCHFRP30047 84 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 APOBEC3AP31941 199 aaPredicted RBP6.73□□□□□ -1.33
CD44-208ENST00000428726 KRTDAPP60985 99 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 MMDQ15546 238 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 JKAMPQ9P055 326 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 PRNDQ9UKY0 176 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 ZNF469Q96JG9 3925 aaPredicted RBP6.73□□□□□ -1.33
CD44-208ENST00000428726 PMCHP20382 165 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 MFAP2P55001 183 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 MEF2CQ06413 473 aaPredicted RBP6.73□□□□□ -1.33
CD44-208ENST00000428726 BAGE3Q86Y29 109 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 BAGE2Q86Y30 109 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 FAM19A2Q8N3H0 131 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 C11orf42Q8N5U0 333 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 OR5AU1Q8NGC0 362 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 RPEQ96AT9 228 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 HSPB9Q9BQS6 159 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 SAMD10Q9BYL1 202 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 TP73-AS1Q9UF72 201 aa6.73□□□□□ -1.33
CD44-208ENST00000428726 FASNP49327 2511 aaKnown RBP6.72□□□□□ -1.33
CD44-208ENST00000428726 IGHV2-26A0A0B4J1V2 119 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 F6UZH7 168 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 TIMM23O14925 209 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 RNASE2P10153 161 aaKnown RBP6.72□□□□□ -1.33
CD44-208ENST00000428726 PPOXP50336 477 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 ERVFC1-1P60608 527 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 FAM168AQ92567 244 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 TMEM18Q96B42 140 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 ZNF835Q9Y2P0 537 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 ZNF257Q9Y2Q1 563 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 RNF114Q9Y508 228 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 A1L4Q6 167 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 K7EN84 100 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 PDE6DO43924 150 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 NTF3P20783 257 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 LYZP61626 148 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 RAB31Q13636 194 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 OR8I2Q8N0Y5 310 aa6.72□□□□□ -1.33
CD44-208ENST00000428726 LSM4Q9Y4Z0 139 aaKnown RBP6.72□□□□□ -1.33
CD44-208ENST00000428726 MDFIC2A0A1B0GVS7 189 aa6.71□□□□□ -1.33
CD44-208ENST00000428726 SERF1AO75920 110 aa6.71□□□□□ -1.33
CD44-208ENST00000428726 VENTXO95231 258 aa6.71□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms