RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 EWSR1Q01844 656 aaKnown RBP eCLIP9.26□□□□□ -0.93
LINC00539-202ENST00000423575 SLC38A11Q08AI6 406 aa9.26□□□□□ -0.93
LINC00539-202ENST00000423575 TIGITQ495A1 244 aa9.26□□□□□ -0.93
LINC00539-202ENST00000423575 STX12Q86Y82 276 aa9.26□□□□□ -0.93
LINC00539-202ENST00000423575 TMEM217Q8N7C4 229 aa9.26□□□□□ -0.93
LINC00539-202ENST00000423575 THAP6Q8TBB0 222 aa9.26□□□□□ -0.93
LINC00539-202ENST00000423575 IGKV1D-37A0A075B6S9 117 aa9.25□□□□□ -0.93
LINC00539-202ENST00000423575 IGKV1OR2-108A0A075B7D4 117 aa9.25□□□□□ -0.93
LINC00539-202ENST00000423575 SMCO3A2RU48 225 aa9.25□□□□□ -0.93
LINC00539-202ENST00000423575 AKR1C1Q04828 323 aa9.25□□□□□ -0.93
LINC00539-202ENST00000423575 FGL1Q08830 312 aa9.25□□□□□ -0.93
LINC00539-202ENST00000423575 TREML4Q6UXN2 200 aa9.25□□□□□ -0.93
LINC00539-202ENST00000423575 UNQ9165/PRO28630Q6UXU0 137 aa9.25□□□□□ -0.93
LINC00539-202ENST00000423575 GPHB5Q86YW7 130 aa9.25□□□□□ -0.93
LINC00539-202ENST00000423575 C1QL4Q86Z23 238 aa9.25□□□□□ -0.93
LINC00539-202ENST00000423575 WFDC9Q8NEX5 89 aa9.25□□□□□ -0.93
LINC00539-202ENST00000423575 OR1S2Q8NGQ3 325 aa9.25□□□□□ -0.93
LINC00539-202ENST00000423575 SLC25A31Q9H0C2 315 aa9.25□□□□□ -0.93
LINC00539-202ENST00000423575 TRAV30A0A087WSZ9 112 aa9.24□□□□□ -0.93
LINC00539-202ENST00000423575 FXYD6-FXYD2A0A087WZ82 144 aa9.24□□□□□ -0.93
LINC00539-202ENST00000423575 FNDC10F2Z333 226 aa9.24□□□□□ -0.93
LINC00539-202ENST00000423575 NDUFA4O00483 81 aa9.24□□□□□ -0.93
LINC00539-202ENST00000423575 OVOL1O14753 267 aa9.24□□□□□ -0.93
LINC00539-202ENST00000423575 SCAF4O95104 1147 aaKnown RBP9.24□□□□□ -0.93
LINC00539-202ENST00000423575 CD33P20138 364 aa9.24□□□□□ -0.93
LINC00539-202ENST00000423575 NHLH2Q02577 135 aa9.24□□□□□ -0.93
LINC00539-202ENST00000423575 RELQ04864 619 aaPredicted RBP9.24□□□□□ -0.93
LINC00539-202ENST00000423575 BAXQ07812 192 aa9.24□□□□□ -0.93
LINC00539-202ENST00000423575 REC114Q7Z4M0 266 aa9.24□□□□□ -0.93
LINC00539-202ENST00000423575 THAP8Q8NA92 274 aa9.24□□□□□ -0.93
LINC00539-202ENST00000423575 TMEM190Q8WZ59 177 aa9.24□□□□□ -0.93
LINC00539-202ENST00000423575 RCC1LQ96I51 464 aaKnown RBP9.24□□□□□ -0.93
LINC00539-202ENST00000423575 ST6GAL2Q96JF0 529 aa9.24□□□□□ -0.93
LINC00539-202ENST00000423575 GGACTQ9BVM4 153 aa9.24□□□□□ -0.93
LINC00539-202ENST00000423575 CMYA5Q8N3K9 4069 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 IGHV3OR16-8A0A075B7F1 116 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 ZNF320A2RRD8 509 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 ZFP92A6NM28 416 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 SCGB2A1O75556 95 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 RPL12P30050 165 aaKnown RBP9.23□□□□□ -0.93
LINC00539-202ENST00000423575 S100A11P31949 105 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 HBG1P69891 147 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 HBG2P69892 147 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 VWC2Q2TAL6 325 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 FAM106AQ4KMX7 169 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 ZNF600Q6ZNG1 722 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 TMEM144Q7Z5S9 345 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 LILRB2Q8N423 598 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 OR9G4Q8NGQ1 327 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 TMEM147Q9BVK8 224 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 UQCC1Q9NVA1 299 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 HSPB11Q9Y547 144 aa9.23□□□□□ -0.93
LINC00539-202ENST00000423575 PUS1Q9Y606 427 aaKnown RBP eCLIP9.23□□□□□ -0.93
LINC00539-202ENST00000423575 TMEM213A2RRL7 107 aa9.22□□□□□ -0.93
LINC00539-202ENST00000423575 A8MWP6 167 aa9.22□□□□□ -0.93
LINC00539-202ENST00000423575 LGALS9O00182 355 aa9.22□□□□□ -0.93
LINC00539-202ENST00000423575 YIF1AO95070 293 aa9.22□□□□□ -0.93
LINC00539-202ENST00000423575 IGLL1P15814 213 aa9.22□□□□□ -0.93
LINC00539-202ENST00000423575 EDN2P20800 178 aa9.22□□□□□ -0.93
LINC00539-202ENST00000423575 YPEL3P61236 119 aaPredicted RBP9.22□□□□□ -0.93
LINC00539-202ENST00000423575 ZNF90Q03938 601 aa9.22□□□□□ -0.93
LINC00539-202ENST00000423575 CLINT1Q14677 625 aa9.22□□□□□ -0.93
LINC00539-202ENST00000423575 TOMM20LQ6UXN7 152 aa9.22□□□□□ -0.93
LINC00539-202ENST00000423575 IL34Q6ZMJ4 242 aa9.22□□□□□ -0.93
LINC00539-202ENST00000423575 OR5C1Q8NGR4 320 aa9.22□□□□□ -0.93
LINC00539-202ENST00000423575 AQP10Q96PS8 301 aa9.22□□□□□ -0.93
LINC00539-202ENST00000423575 TRGV9Q99603 122 aa9.22□□□□□ -0.93
LINC00539-202ENST00000423575 C20orf24Q9BUV8 137 aa9.22□□□□□ -0.93
LINC00539-202ENST00000423575 ZFAND3Q9H8U3 227 aa9.22□□□□□ -0.93
LINC00539-202ENST00000423575 LSM4Q9Y4Z0 139 aaKnown RBP9.22□□□□□ -0.93
LINC00539-202ENST00000423575 UBE2L5PA0A1B0GUS4 154 aa9.21□□□□□ -0.94
LINC00539-202ENST00000423575 RNF222A6NCQ9 220 aa9.21□□□□□ -0.94
LINC00539-202ENST00000423575 SEC14L6B5MCN3 397 aa9.21□□□□□ -0.94
LINC00539-202ENST00000423575 ZNF207O43670 478 aaKnown RBP9.21□□□□□ -0.94
LINC00539-202ENST00000423575 TOMM40O96008 361 aa9.21□□□□□ -0.94
LINC00539-202ENST00000423575 OR2F1Q13607 317 aa9.21□□□□□ -0.94
LINC00539-202ENST00000423575 ATP6V1FQ16864 119 aa9.21□□□□□ -0.94
LINC00539-202ENST00000423575 TM4SF20Q53R12 229 aa9.21□□□□□ -0.94
LINC00539-202ENST00000423575 ADAMTSL5Q6ZMM2 481 aa9.21□□□□□ -0.94
LINC00539-202ENST00000423575 ZNF546Q86UE3 836 aa9.21□□□□□ -0.94
LINC00539-202ENST00000423575 TCTE3Q8IZS6 198 aa9.21□□□□□ -0.94
LINC00539-202ENST00000423575 OR11H4Q8NGC9 324 aa9.21□□□□□ -0.94
LINC00539-202ENST00000423575 SMIM3Q9BZL3 60 aa9.21□□□□□ -0.94
LINC00539-202ENST00000423575 NPVFQ9HCQ7 196 aa9.21□□□□□ -0.94
LINC00539-202ENST00000423575 TNFSF18Q9UNG2 199 aa9.21□□□□□ -0.94
LINC00539-202ENST00000423575 WDR83OSQ9Y284 106 aa9.21□□□□□ -0.94
LINC00539-202ENST00000423575 C2orf70A6NJV1 201 aa9.2□□□□□ -0.94
LINC00539-202ENST00000423575 CSN3P07498 182 aa9.2□□□□□ -0.94
LINC00539-202ENST00000423575 RD3LP0DJH9 198 aa9.2□□□□□ -0.94
LINC00539-202ENST00000423575 PSG1P11464 419 aa9.2□□□□□ -0.94
LINC00539-202ENST00000423575 TMEM182Q6ZP80 229 aaPredicted RBP9.2□□□□□ -0.94
LINC00539-202ENST00000423575 AKAP14Q86UN6 197 aa9.2□□□□□ -0.94
LINC00539-202ENST00000423575 Q8WTZ3 238 aa9.2□□□□□ -0.94
LINC00539-202ENST00000423575 MGST2Q99735 147 aa9.2□□□□□ -0.94
LINC00539-202ENST00000423575 WFDC1Q9HC57 220 aa9.2□□□□□ -0.94
LINC00539-202ENST00000423575 DAZ1Q9NQZ3 744 aaKnown RBP9.2□□□□□ -0.94
LINC00539-202ENST00000423575 PEMTQ9UBM1 199 aa9.2□□□□□ -0.94
LINC00539-202ENST00000423575 FBXL17Q9UF56 701 aa9.2□□□□□ -0.94
LINC00539-202ENST00000423575 UFC1Q9Y3C8 167 aa9.2□□□□□ -0.94
LINC00539-202ENST00000423575 NOTCH1P46531 2555 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms