RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 TXNDC17Q9BRA2 123 aa9.19□□□□□ -0.94
PTPRF-204ENST00000412568 TUBA4BQ9H853 241 aa9.19□□□□□ -0.94
PTPRF-204ENST00000412568 NPIPB11E5RHQ5 1161 aa9.19□□□□□ -0.94
PTPRF-204ENST00000412568 CORTO00230 105 aa9.19□□□□□ -0.94
PTPRF-204ENST00000412568 PPP1R27Q86WC6 154 aa9.19□□□□□ -0.94
PTPRF-204ENST00000412568 STXBP6Q8NFX7 210 aa9.19□□□□□ -0.94
PTPRF-204ENST00000412568 CEP192Q8TEP8 1941 aa9.19□□□□□ -0.94
PTPRF-204ENST00000412568 SRSF12Q8WXF0 261 aaKnown RBP9.19□□□□□ -0.94
PTPRF-204ENST00000412568 SLC25A33Q9BSK2 321 aa9.19□□□□□ -0.94
PTPRF-204ENST00000412568 SZT2Q5T011 3432 aa9.19□□□□□ -0.94
PTPRF-204ENST00000412568 C5orf52A6NGY3 159 aa9.19□□□□□ -0.94
PTPRF-204ENST00000412568 UBE2CO00762 179 aa9.19□□□□□ -0.94
PTPRF-204ENST00000412568 IBA57Q5T440 356 aaKnown RBP9.19□□□□□ -0.94
PTPRF-204ENST00000412568 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.19□□□□□ -0.94
PTPRF-204ENST00000412568 SSC4DQ8WTU2 575 aa9.19□□□□□ -0.94
PTPRF-204ENST00000412568 WNT10AQ9GZT5 417 aa9.19□□□□□ -0.94
PTPRF-204ENST00000412568 SCO2A0A1W2PP80 73 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 SH2D7A6NKC9 451 aaPredicted RBP9.18□□□□□ -0.94
PTPRF-204ENST00000412568 FOXI3A8MTJ6 420 aaPredicted RBP9.18□□□□□ -0.94
PTPRF-204ENST00000412568 C10orf142B7Z368 130 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 ISLRO14498 428 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 CIDEAO60543 219 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 MT-ND6P03923 174 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 IGHV1-8P0DP01 117 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 HIST1H1EP10412 219 aaKnown RBP9.18□□□□□ -0.94
PTPRF-204ENST00000412568 MFAP4P55083 255 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 SLX1AQ9BQ83 275 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 MBNL3Q9NUK0 354 aaKnown RBP9.18□□□□□ -0.94
PTPRF-204ENST00000412568 SLC17A3O00476 420 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 IGHV3-11P01762 117 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 AMY1AP04745 511 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 UFC1Q9Y3C8 167 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 LRRK2Q5S007 2527 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 DYSFO75923 2080 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 IGHV2-26A0A0B4J1V2 119 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 NDUFS7O75251 213 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 C14orf144Q96I85 54 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 PLXNB1O43157 2135 aa9.18□□□□□ -0.94
PTPRF-204ENST00000412568 WNT2P09544 360 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 ERVK11-1P61568 191 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 RPL23P62829 140 aaKnown RBP9.17□□□□□ -0.94
PTPRF-204ENST00000412568 RELBQ01201 579 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 ZNF124Q15973 351 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 GOLT1AQ6ZVE7 132 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 TRANK1O15050 2925 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 GAGE10A6NGK3 116 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 HAX1O00165 279 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 GPR183P32249 361 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 IL15RAQ13261 267 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 BRD3OSQ6XYD6 125 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 SEM1Q6ZVN7 128 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 TMEM219Q86XT9 240 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 OR5R1Q8NH85 324 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 NDUFAF3Q9BU61 184 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 WDR83OSQ9Y284 106 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 EPG5Q9HCE0 2579 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 LOC389332A0A1B0GUA5 103 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 IGLV1-44P01699 117 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 PYYP10082 97 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 NMUP48645 174 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 TMEM30BQ3MIR4 351 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 MAPK1IP1LQ8NDC0 245 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 MBD3L1Q8WWY6 194 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 IGFBPL1Q8WX77 278 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 SFRP2Q96HF1 295 aa9.17□□□□□ -0.94
PTPRF-204ENST00000412568 HLA-DQA1P01909 254 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 TMEM14EPQ6UXP3 125 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 RAB37Q96AX2 223 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 JMJD1CQ15652 2540 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 MUC21A0A0G2JKD1 596 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 MUC21A0A140T8X8 626 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 A6NDN8 102 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 MUC21Q5SSG8 566 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 NUP37Q8NFH4 326 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 GRAMD2BQ96HH9 432 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 TRAV40A0A0B4J280 105 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 F5H697 171 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 IGKV1-39P01597 117 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 IGKV1D-39P04432 117 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 ZNF134P52741 427 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 CENPWQ5EE01 88 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 PYY3Q5JQD4 70 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 BPESC1Q9GZL8 116 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 FBXL7Q9UJT9 491 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 TRAV5A0A0B4J249 113 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 LEPROTL1O95214 131 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 NBEAP1P0C6P0 100 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 PAX9P55771 341 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 TREML4Q6UXN2 200 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 ERASQ7Z444 233 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 TMEM116Q8NCL8 245 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 DUX5Q96PT3 197 aa9.16□□□□□ -0.94
PTPRF-204ENST00000412568 A0A087WWC5 75 aa9.15□□□□□ -0.94
PTPRF-204ENST00000412568 RBFOX2O43251 390 aaKnown RBP eCLIP9.15□□□□□ -0.948e-7■□□□□ 9.9
PTPRF-204ENST00000412568 RIGQ13278 110 aa9.15□□□□□ -0.94
PTPRF-204ENST00000412568 PMCHL1Q16048 86 aa9.15□□□□□ -0.94
PTPRF-204ENST00000412568 TMEM97Q5BJF2 176 aa9.15□□□□□ -0.94
PTPRF-204ENST00000412568 SPATA31B1PQ5VZV4 182 aa9.15□□□□□ -0.94
PTPRF-204ENST00000412568 IGFL2Q6UWQ7 119 aa9.15□□□□□ -0.94
PTPRF-204ENST00000412568 HSPB8Q9UJY1 196 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms