RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 PATE2Q6UY27 113 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 LYG1Q8N1E2 194 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 C5orf17Q8NAS9 161 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 OR4C13Q8NGP0 309 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 OR9G1Q8NH87 305 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 PERPQ96FX8 193 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 PMCHL2Q9BQD1 86 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 NPFFR1Q9GZQ6 430 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 GCM1Q9NP62 436 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 EPDR1Q9UM22 224 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 SPTBN5Q9NRC6 3674 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 TRAV30A0A087WSZ9 112 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 COX7A2P2O60397 106 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 EBLN2Q6P2I7 272 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 MOGAT3Q86VF5 341 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 TMEM116Q8NCL8 245 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 ST6GALNAC6Q969X2 333 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 URB1-AS1Q96HZ7 61 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 SRSF8Q9BRL6 282 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 RPP21Q9H633 154 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 ZNF355PQ9NSJ1 428 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 CGB1A6NKQ9 187 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 TNFRSF13BO14836 293 aaPredicted RBP4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 ACTL6BO94805 426 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 GOSR1O95249 250 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 IGLV2-23P01705 113 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 THBDP07204 575 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 MC5RP33032 325 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 MFAP2P55001 183 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 FXYD3Q14802 87 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 MRPL54Q6P161 138 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 ITLN1Q8WWA0 313 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 TNFRSF14Q92956 283 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 FAM103A1Q9BTL3 118 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 RNF24Q9Y225 148 aa4.63□□□□□ -1.67
CCDC88A-203ENST00000412148 TECTAO75443 2155 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 HIGD1CA8MV81 97 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 M0R2Z0 102 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 CDX4O14627 284 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 PPBPP02775 128 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 IGKV1-16P04430 117 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 LIPFP07098 398 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 LGALS7P47929 136 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 IGFL3Q6UXB1 125 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 CNEP1R1Q8N9A8 125 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 TEX45Q8NA69 505 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 FAM168AQ92567 244 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 GSX1Q9H4S2 264 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 PCNX2A6NKB5 2137 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 HEATR1Q9H583 2144 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 CACNA1DQ01668 2161 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 IGHV3-64DA0A0J9YX35 117 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 SYS1-DBNDD2H3BUS1 97 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 OVOL3O00110 214 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 CCL25O15444 150 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 IGHV1-46P01743 117 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 APOHP02749 345 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 MGST1P10620 155 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 GP9P14770 177 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 IGLL1P15814 213 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 RBX1P62877 108 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 LTC4SQ16873 150 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 PSMG4Q5JS54 123 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 SAPCD1Q5SSQ6 148 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 MORN5Q5VZ52 161 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 Q6AWC8 147 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 C12orf54Q6X4T0 127 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 RBPMS2Q6ZRY4 209 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 ASCL5Q7RTU5 278 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 FLYWCH2Q96CP2 140 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 FNDC4Q9H6D8 234 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 WASHC3Q9Y3C0 194 aa4.62□□□□□ -1.67
CCDC88A-203ENST00000412148 IGHV3OR15-7A0A075B7D8 119 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 VWC2LB2RUY7 222 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 CRYGBP07316 175 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 CEACAM3P40198 252 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 HOXA4Q00056 320 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 WT1-ASQ06250 92 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 MRGPRG-AS1Q2M3A8 158 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 KIAA1644Q3SXP7 199 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 UTF1Q5T230 341 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 ZNF841Q6ZN19 808 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 SEM1Q6ZVN7 128 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 COX8CQ7Z4L0 72 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 LYPD1Q8N2G4 141 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 DEFB125Q8N687 156 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 HARBI1Q96MB7 349 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 TMEM191AQ9H0A3 160 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 OTORQ9NRC9 128 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 KAAG1Q9UBP8 84 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 LOC102724200A0A096LPH7 203 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 TNFRSF1AP19438 455 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 PTTG1IPP53801 180 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 DLX6P56179 175 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 TNFAIP6P98066 277 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 HES3Q5TGS1 186 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 LINC01545Q5VT33 79 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 MOB3BQ86TA1 216 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 C8orf46Q8TAG6 207 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 RNF5Q99942 180 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms