RNA–Protein interactions for RNA: ENST00000409854.5

EPHA4-202, Transcript of EPH receptor A4, humanhuman

TSL 1 (best) BASIC

Gene EPHA4, Length 3,454 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-202ENST00000409854 APCP25054 2843 aa4.38□□□□□ -1.71
EPHA4-202ENST00000409854 TRAV1-1A0A0B4J248 108 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 SEC14L6B5MCN3 397 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 C17orf112F2Z3M2 114 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 AGPAT2O15120 278 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 OPRK1P41145 380 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 PLGLAQ15195 96 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 SPSB3Q6PJ21 355 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 ATRAIDQ6UW56 229 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 BRD3OSQ6XYD6 125 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 TMEM144Q7Z5S9 345 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 GGTLC1Q9BX51 225 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 VSIRQ9H7M9 311 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 CORTO00230 105 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 PRH1P02810 166 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 GNB1P62873 340 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 GAMTQ14353 236 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 FXYD3Q14802 87 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 ZNF726P1Q15940 193 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 KLK9Q2XQG4 91 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 ASPHD1Q5U4P2 390 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 TEPPQ6URK8 271 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 FAM213BQ8TBF2 198 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 MBD3L1Q8WWY6 194 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 PACRGQ96M98 296 aaPredicted RBP4.37□□□□□ -1.71
EPHA4-202ENST00000409854 SCRT1Q9BWW7 348 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 FNDC4Q9H6D8 234 aaPredicted RBP4.37□□□□□ -1.71
EPHA4-202ENST00000409854 KCNIP2Q9NS61 270 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 RPRMQ9NS64 109 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 KLK9Q9UKQ9 250 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 PDZD2O15018 2839 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 IGKV1OR2-108A0A075B7D4 117 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 IGHV3OR16-10A0A075B7F0 116 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 IGHV7-81A0A0B4J1V7 117 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 PGPEP1LA6NFU8 196 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 NPIPB5A8MRT5 1133 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 PF4V1P10720 104 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 PRR20EP86478 221 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 PRR20CP86479 221 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 PRR20DP86480 221 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 PRR20BP86481 221 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 PRR20AP86496 221 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 NDPQ00604 133 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 SLAQ13239 276 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 C9orf139Q6ZV77 190 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 THAP8Q8NA92 274 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 LFNGQ8NES3 379 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 SSMEM1Q8WWF3 244 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 ARPC1AQ92747 370 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 FOXC2Q99958 501 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 SEC11CQ9BY50 192 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 HRH4Q9H3N8 390 aa4.37□□□□□ -1.71
EPHA4-202ENST00000409854 NBPF19A0A087WUL8 3843 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 REG1AP05451 166 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 EGR2P11161 476 aaPredicted RBP4.36□□□□□ -1.71
EPHA4-202ENST00000409854 RPL29P47914 159 aaKnown RBP4.36□□□□□ -1.71
EPHA4-202ENST00000409854 CX3CL1P78423 397 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 ZNF616Q08AN1 781 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 SSX7Q7RTT5 188 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 C5orf56Q8N8D9 126 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 ZNF709Q8N972 641 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 RCC1LQ96I51 464 aaKnown RBP4.36□□□□□ -1.71
EPHA4-202ENST00000409854 SMCO3A2RU48 225 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 NCBP2LA6PVI3 153 aaKnown RBP4.36□□□□□ -1.71
EPHA4-202ENST00000409854 YIF1AO95070 293 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 TSPAN15O95858 294 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 TGFAP01135 160 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 CRIP2P52943 208 aaPredicted RBP4.36□□□□□ -1.71
EPHA4-202ENST00000409854 SELENOTP62341 195 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 PYY3Q5JQD4 70 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 FFAR4Q5NUL3 377 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 TCF24Q7RTU0 167 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 RPP25LQ8N5L8 163 aaKnown RBP4.36□□□□□ -1.71
EPHA4-202ENST00000409854 TTC9CQ8N5M4 171 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 MAPK1IP1LQ8NDC0 245 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 OR1L6Q8NGR2 347 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 RNF2Q99496 336 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 SLC45A2Q9UMX9 530 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 MOB4Q9Y3A3 225 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 IGKV1D-37A0A075B6S9 117 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 A6NDX4 124 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 I3L2K1 104 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 CNIH1O95406 144 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 HBE1P02100 147 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 CD5P06127 495 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 LINC00869P0C866 280 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 STAG3L2P0CL84 134 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 ELLP55199 621 aaPredicted RBP4.36□□□□□ -1.71
EPHA4-202ENST00000409854 PMS2P11Q13670 270 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 MLANAQ16655 118 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 ACOT6Q3I5F7 207 aaPredicted RBP4.36□□□□□ -1.71
EPHA4-202ENST00000409854 TMEM116Q8NCL8 245 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 SLC35E1Q96K37 410 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 HSPB9Q9BQS6 159 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 SLC25A33Q9BSK2 321 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 CLEC5AQ9NY25 188 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 ZFP30Q9Y2G7 519 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 PXMP4Q9Y6I8 212 aa4.36□□□□□ -1.71
EPHA4-202ENST00000409854 CTXND1A0A1B0GTU2 59 aa4.35□□□□□ -1.71
EPHA4-202ENST00000409854 COLCA2A8K830 154 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms