RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.13■□□□□ 0.018e-7■■■■□ 25
USP48-204ENST00000400301 ARHGAP21Q5T5U3 1957 aa15.13■□□□□ 0.01
USP48-204ENST00000400301 TMEM189A5PLL7 270 aa15.13■□□□□ 0.01
USP48-204ENST00000400301 IGLV2-14P01704 120 aa15.13■□□□□ 0.01
USP48-204ENST00000400301 HSPB8Q9UJY1 196 aa15.13■□□□□ 0.01
USP48-204ENST00000400301 EPDR1Q9UM22 224 aa15.13■□□□□ 0.01
USP48-204ENST00000400301 FAM106CPP0CH98 169 aa15.13■□□□□ 0.01
USP48-204ENST00000400301 UNQ5815/PRO19632Q6UWF5 114 aa15.13■□□□□ 0.01
USP48-204ENST00000400301 NDUFAF3Q9BU61 184 aa15.13■□□□□ 0.01
USP48-204ENST00000400301 CHD9Q3L8U1 2897 aa15.12■□□□□ 0.01
USP48-204ENST00000400301 TRAV30A0A087WSZ9 112 aa15.12■□□□□ 0.01
USP48-204ENST00000400301 LOC389332A0A1B0GUA5 103 aa15.12■□□□□ 0.01
USP48-204ENST00000400301 LOXL3P58215 753 aa15.12■□□□□ 0.01
USP48-204ENST00000400301 PMCHL1Q16048 86 aa15.12■□□□□ 0.01
USP48-204ENST00000400301 CHODLQ9H9P2 273 aa15.12■□□□□ 0.01
USP48-204ENST00000400301 UQCR10Q9UDW1 63 aa15.12■□□□□ 0.01
USP48-204ENST00000400301 IGLV3-9A0A075B6K5 115 aa15.12■□□□□ 0.01
USP48-204ENST00000400301 C19orf35Q6ZS72 473 aa15.12■□□□□ 0.01
USP48-204ENST00000400301 MUC6Q6W4X9 2439 aa15.12■□□□□ 0.01
USP48-204ENST00000400301 COL5A1-AS1Q5SY13 56 aa15.11■□□□□ 0.01
USP48-204ENST00000400301 OR8A1Q8NGG7 326 aa15.11■□□□□ 0.01
USP48-204ENST00000400301 VKORC1Q9BQB6 163 aa15.11■□□□□ 0.01
USP48-204ENST00000400301 PRSS8Q16651 343 aa15.11■□□□□ 0.01
USP48-204ENST00000400301 IGFL3Q6UXB1 125 aa15.11■□□□□ 0.01
USP48-204ENST00000400301 NEUROG1Q92886 237 aa15.11■□□□□ 0.01
USP48-204ENST00000400301 TCF24Q7RTU0 167 aa15.11■□□□□ 0.01
USP48-204ENST00000400301 CENPVQ7Z7K6 275 aaPredicted RBP15.11■□□□□ 0.01
USP48-204ENST00000400301 SSBP4Q9BWG4 385 aaPredicted RBP15.11■□□□□ 0.01
USP48-204ENST00000400301 GNB1LQ9BYB4 327 aa15.11■□□□□ 0.01
USP48-204ENST00000400301 NRN1Q9NPD7 142 aa15.11■□□□□ 0.01
USP48-204ENST00000400301 CLEC5AQ9NY25 188 aa15.11■□□□□ 0.01
USP48-204ENST00000400301 DKK4Q9UBT3 224 aa15.11■□□□□ 0.01
USP48-204ENST00000400301 RPP21Q9H633 154 aaKnown RBP15.11■□□□□ 0.01
USP48-204ENST00000400301 UFC1Q9Y3C8 167 aa15.11■□□□□ 0.01
USP48-204ENST00000400301 IGHV2-26A0A0B4J1V2 119 aa15.1■□□□□ 0.01
USP48-204ENST00000400301 RPL7P18124 248 aaKnown RBP15.1■□□□□ 0.01
USP48-204ENST00000400301 KLRB1Q12918 225 aa15.1■□□□□ 0.01
USP48-204ENST00000400301 SPRNQ5BIV9 151 aa15.1■□□□□ 0.01
USP48-204ENST00000400301 IGKV3-7A0A075B6H7 116 aa15.1■□□□□ 0.01
USP48-204ENST00000400301 OR2J3O76001 311 aa15.1■□□□□ 0.01
USP48-204ENST00000400301 ZNF114Q8NC26 417 aa15.1■□□□□ 0.01
USP48-204ENST00000400301 TNCP24821 2201 aa15.1■□□□□ 0.01
USP48-204ENST00000400301 J3KRW8 73 aa15.1■□□□□ 0.01
USP48-204ENST00000400301 ANKHD1Q8IWZ3 2542 aaKnown RBP15.09■□□□□ 0.01
USP48-204ENST00000400301 IGHV3-23P01764 117 aa15.09■□□□□ 0.01
USP48-204ENST00000400301 CEACAM8P31997 349 aaPredicted RBP15.09■□□□□ 0.01
USP48-204ENST00000400301 ATG101Q9BSB4 218 aa15.09■□□□□ 0.01
USP48-204ENST00000400301 NCOR1P1Q9H4R4 102 aa15.09■□□□□ 0.01
USP48-204ENST00000400301 TIMM23O14925 209 aa15.09■□□□□ 0.01
USP48-204ENST00000400301 CD33P20138 364 aa15.09■□□□□ 0.01
USP48-204ENST00000400301 FCER1GP30273 86 aa15.09■□□□□ 0.01
USP48-204ENST00000400301 CDC42EP3Q9UKI2 254 aa15.09■□□□□ 0.01
USP48-204ENST00000400301 LAMA3Q16787 3333 aa15.09■□□□□ 0.01
USP48-204ENST00000400301 FNDC10F2Z333 226 aa15.09■□□□□ 0.01
USP48-204ENST00000400301 KCNS1Q96KK3 526 aa15.09■□□□□ 0.01
USP48-204ENST00000400301 IGFL2Q6UWQ7 119 aa15.08■□□□□ 0.01
USP48-204ENST00000400301 BMPR1BO00238 502 aa15.08■□□□□ 0
USP48-204ENST00000400301 GZMBP10144 247 aa15.08■□□□□ 0
USP48-204ENST00000400301 PTTG1IPP53801 180 aa15.08■□□□□ 0
USP48-204ENST00000400301 CTAG1AP78358 180 aa15.08■□□□□ 0
USP48-204ENST00000400301 C11orf42Q8N5U0 333 aa15.08■□□□□ 0
USP48-204ENST00000400301 TNFRSF14Q92956 283 aa15.08■□□□□ 0
USP48-204ENST00000400301 C5orf30Q96GV9 206 aa15.08■□□□□ 0
USP48-204ENST00000400301 FMC1Q96HJ9 113 aa15.08■□□□□ 0
USP48-204ENST00000400301 RNF224P0DH78 156 aa15.08■□□□□ 0
USP48-204ENST00000400301 HINT1P49773 126 aaPredicted RBP15.08■□□□□ 0
USP48-204ENST00000400301 LY96Q9Y6Y9 160 aa15.08■□□□□ 0
USP48-204ENST00000400301 IGHV3OR16-8A0A075B7F1 116 aa15.08■□□□□ 0
USP48-204ENST00000400301 A0A1B0GUS0 222 aa15.08■□□□□ 0
USP48-204ENST00000400301 ODF3L1Q8IXM7 274 aa15.08■□□□□ 0
USP48-204ENST00000400301 LINC00479Q96M42 142 aa15.08■□□□□ 0
USP48-204ENST00000400301 RABAC1Q9UI14 185 aa15.08■□□□□ 0
USP48-204ENST00000400301 NBR2O15453 112 aa15.07■□□□□ 0
USP48-204ENST00000400301 PRSS1P07477 247 aa15.07■□□□□ 0
USP48-204ENST00000400301 ZNF672Q499Z4 452 aaPredicted RBP15.07■□□□□ 0
USP48-204ENST00000400301 Q8TCH9 128 aa15.07■□□□□ 0
USP48-204ENST00000400301 TWIST1Q15672 202 aa15.07■□□□□ 0
USP48-204ENST00000400301 NUDT10Q8NFP7 164 aa15.07■□□□□ 0
USP48-204ENST00000400301 OR4C5Q8NGB2 326 aa15.07■□□□□ 0
USP48-204ENST00000400301 NUDT11Q96G61 164 aa15.07■□□□□ 0
USP48-204ENST00000400301 C21orf62Q9NYP8 219 aa15.07■□□□□ 0
USP48-204ENST00000400301 PIEZO2Q9H5I5 2752 aa15.06■□□□□ 0
USP48-204ENST00000400301 IGHV1-3A0A0C4DH29 117 aa15.06■□□□□ 0
USP48-204ENST00000400301 SRRM4A7MD48 611 aaKnown RBP15.06■□□□□ 0
USP48-204ENST00000400301 HLA-DRB1P01911 266 aa15.06■□□□□ 0
USP48-204ENST00000400301 BMI1P35226 326 aa15.06■□□□□ 0
USP48-204ENST00000400301 C3orf36Q3SXR2 165 aa15.06■□□□□ 0
USP48-204ENST00000400301 LINC00469Q8N7U9 141 aa15.06■□□□□ 0
USP48-204ENST00000400301 IGHV3OR16-13A0A075B7E8 117 aa15.06■□□□□ 0
USP48-204ENST00000400301 IGHV3-74A0A0B4J1X5 117 aa15.06■□□□□ 0
USP48-204ENST00000400301 E7EQL1 145 aa15.06■□□□□ 0
USP48-204ENST00000400301 PRB4P10163 310 aaPredicted RBP15.06■□□□□ 0
USP48-204ENST00000400301 RNF151Q2KHN1 245 aa15.06■□□□□ 0
USP48-204ENST00000400301 CGB1A6NKQ9 187 aa15.06■□□□□ 0
USP48-204ENST00000400301 RELQ04864 619 aaPredicted RBP15.05■□□□□ 0
USP48-204ENST00000400301 VWC2Q2TAL6 325 aa15.05■□□□□ 0
USP48-204ENST00000400301 PRR30Q53SZ7 412 aaPredicted RBP15.05■□□□□ 0
USP48-204ENST00000400301 OTORQ9NRC9 128 aa15.05■□□□□ 0
USP48-204ENST00000400301 ZNF324O75467 553 aaPredicted RBP15.05■□□□□ -0
USP48-204ENST00000400301 CKS2P33552 79 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms