RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 IFNA4P05014 189 aa17.68■□□□□ 0.42
SHMT1-204ENST00000395682 C4orf46Q504U0 113 aa17.68■□□□□ 0.42
SHMT1-204ENST00000395682 LYG2Q86SG7 212 aa17.68■□□□□ 0.42
SHMT1-204ENST00000395682 COQ8AQ8NI60 647 aa17.68■□□□□ 0.42
SHMT1-204ENST00000395682 NPIPB3Q92617 1050 aa17.68■□□□□ 0.42
SHMT1-204ENST00000395682 NBEAL2Q6ZNJ1 2754 aa17.68■□□□□ 0.42
SHMT1-204ENST00000395682 MED6O75586 246 aa17.67■□□□□ 0.42
SHMT1-204ENST00000395682 APOHP02749 345 aaPredicted RBP17.67■□□□□ 0.42
SHMT1-204ENST00000395682 IGLC1P0CG04 106 aa17.67■□□□□ 0.42
SHMT1-204ENST00000395682 IAPPP10997 89 aa17.67■□□□□ 0.42
SHMT1-204ENST00000395682 OR10J1P30954 320 aa17.67■□□□□ 0.42
SHMT1-204ENST00000395682 BMI1P35226 326 aa17.67■□□□□ 0.42
SHMT1-204ENST00000395682 OR1S2Q8NGQ3 325 aa17.67■□□□□ 0.42
SHMT1-204ENST00000395682 ST8SIA2Q92186 375 aa17.67■□□□□ 0.42
SHMT1-204ENST00000395682 ACY3Q96HD9 319 aa17.67■□□□□ 0.42
SHMT1-204ENST00000395682 SPATA25Q9BR10 227 aa17.67■□□□□ 0.42
SHMT1-204ENST00000395682 CCDC32Q9BV29 185 aa17.67■□□□□ 0.42
SHMT1-204ENST00000395682 OR4C46A6NHA9 309 aa17.66■□□□□ 0.42
SHMT1-204ENST00000395682 ADAP1O75689 374 aa17.66■□□□□ 0.42
SHMT1-204ENST00000395682 NPPCP23582 126 aa17.66■□□□□ 0.42
SHMT1-204ENST00000395682 MAGT1Q9H0U3 335 aa17.66■□□□□ 0.42
SHMT1-204ENST00000395682 UBQLN2Q9UHD9 624 aa17.66■□□□□ 0.42
SHMT1-204ENST00000395682 IGHV3-66A0A0C4DH42 116 aa17.65■□□□□ 0.42
SHMT1-204ENST00000395682 SYNGR2O43760 224 aa17.65■□□□□ 0.42
SHMT1-204ENST00000395682 YPEL3P61236 119 aaPredicted RBP17.65■□□□□ 0.42
SHMT1-204ENST00000395682 LILRB2Q8N423 598 aa17.65■□□□□ 0.42
SHMT1-204ENST00000395682 Q8WTZ3 238 aa17.65■□□□□ 0.42
SHMT1-204ENST00000395682 S100ZQ8WXG8 99 aa17.65■□□□□ 0.42
SHMT1-204ENST00000395682 VSIRQ9H7M9 311 aa17.65■□□□□ 0.42
SHMT1-204ENST00000395682 IGKV3-7A0A075B6H7 116 aa17.64■□□□□ 0.41
SHMT1-204ENST00000395682 IFNA21P01568 189 aa17.64■□□□□ 0.41
SHMT1-204ENST00000395682 GPX4P36969 197 aaPredicted RBP17.64■□□□□ 0.41
SHMT1-204ENST00000395682 FAM90A2PQ658T7 463 aa17.64■□□□□ 0.41
SHMT1-204ENST00000395682 TCF24Q7RTU0 167 aa17.64■□□□□ 0.41
SHMT1-204ENST00000395682 CIB3Q96Q77 187 aaPredicted RBP17.64■□□□□ 0.41
SHMT1-204ENST00000395682 METTL26Q96S19 204 aa17.64■□□□□ 0.41
SHMT1-204ENST00000395682 MPTX1A8MV57 137 aa17.63■□□□□ 0.41
SHMT1-204ENST00000395682 DFFBO76075 338 aa17.63■□□□□ 0.41
SHMT1-204ENST00000395682 TCRBP04435 133 aa17.63■□□□□ 0.41
SHMT1-204ENST00000395682 CD5P06127 495 aa17.63■□□□□ 0.41
SHMT1-204ENST00000395682 TFPI2P48307 235 aa17.63■□□□□ 0.41
SHMT1-204ENST00000395682 RAB11AP62491 216 aa17.63■□□□□ 0.41
SHMT1-204ENST00000395682 CITED4Q96RK1 184 aa17.63■□□□□ 0.41
SHMT1-204ENST00000395682 C20orf85Q9H1P6 137 aa17.63■□□□□ 0.41
SHMT1-204ENST00000395682 PAIP2BQ9ULR5 123 aaKnown RBP17.63■□□□□ 0.41
SHMT1-204ENST00000395682 WRBO00258 174 aa17.62■□□□□ 0.41
SHMT1-204ENST00000395682 CRYBB3P26998 211 aa17.62■□□□□ 0.41
SHMT1-204ENST00000395682 RPP30P78346 268 aaKnown RBP17.62■□□□□ 0.41
SHMT1-204ENST00000395682 ODF3L2Q3SX64 289 aa17.62■□□□□ 0.41
SHMT1-204ENST00000395682 GBGT1Q8N5D6 347 aa17.62■□□□□ 0.41
SHMT1-204ENST00000395682 TMEM231Q9H6L2 316 aa17.62■□□□□ 0.41
SHMT1-204ENST00000395682 TRAV6A0A075B6T7 132 aa17.61■□□□□ 0.41
SHMT1-204ENST00000395682 A0A1W2PS18 150 aa17.61■□□□□ 0.41
SHMT1-204ENST00000395682 RD3LP0DJH9 198 aa17.61■□□□□ 0.41
SHMT1-204ENST00000395682 PAFAH1B2P68402 229 aa17.61■□□□□ 0.41
SHMT1-204ENST00000395682 ID3Q02535 119 aa17.61■□□□□ 0.41
SHMT1-204ENST00000395682 GAMTQ14353 236 aa17.61■□□□□ 0.41
SHMT1-204ENST00000395682 LOC102724200A0A096LPH7 203 aaPredicted RBP17.6■□□□□ 0.41
SHMT1-204ENST00000395682 RPL11P62913 178 aaKnown RBP17.6■□□□□ 0.41
SHMT1-204ENST00000395682 MITD1Q8WV92 249 aa17.6■□□□□ 0.41
SHMT1-204ENST00000395682 NARS2Q96I59 477 aaKnown RBP17.6■□□□□ 0.41
SHMT1-204ENST00000395682 SLC35E1Q96K37 410 aa17.6■□□□□ 0.41
SHMT1-204ENST00000395682 GGTLC1Q9BX51 225 aa17.6■□□□□ 0.41
SHMT1-204ENST00000395682 RETNQ9HD89 108 aa17.6■□□□□ 0.41
SHMT1-204ENST00000395682 CMC4P56277 68 aaPredicted RBP17.59■□□□□ 0.41
SHMT1-204ENST00000395682 WFDC3Q8IUB2 231 aa17.59■□□□□ 0.41
SHMT1-204ENST00000395682 FAM110AQ9BQ89 295 aa17.59■□□□□ 0.41
SHMT1-204ENST00000395682 NUDT15Q9NV35 164 aa17.59■□□□□ 0.41
SHMT1-204ENST00000395682 PTTG2Q9NZH5 202 aa17.59■□□□□ 0.41
SHMT1-204ENST00000395682 DNASE2O00115 360 aaPredicted RBP17.58■□□□□ 0.4
SHMT1-204ENST00000395682 TOMM40O96008 361 aa17.58■□□□□ 0.4
SHMT1-204ENST00000395682 IL4P05112 153 aa17.58■□□□□ 0.4
SHMT1-204ENST00000395682 NKX2-1P43699 371 aaPredicted RBP17.58■□□□□ 0.4
SHMT1-204ENST00000395682 POLR2GP62487 172 aaKnown RBP eCLIP17.58■□□□□ 0.4
SHMT1-204ENST00000395682 SPANXN5Q5MJ07 72 aa17.58■□□□□ 0.4
SHMT1-204ENST00000395682 OR4D5Q8NGN0 318 aa17.58■□□□□ 0.4
SHMT1-204ENST00000395682 MS4A6AQ9H2W1 248 aa17.58■□□□□ 0.4
SHMT1-204ENST00000395682 FAM240BA0A1B0GVZ2 78 aa17.57■□□□□ 0.4
SHMT1-204ENST00000395682 ZFP92A6NM28 416 aa17.57■□□□□ 0.4
SHMT1-204ENST00000395682 HNRNPCP07910 306 aaKnown RBP eCLIP17.57■□□□□ 0.4
SHMT1-204ENST00000395682 PSG1P11464 419 aa17.57■□□□□ 0.4
SHMT1-204ENST00000395682 P2RY1P47900 373 aa17.57■□□□□ 0.4
SHMT1-204ENST00000395682 MZT2BQ6NZ67 158 aa17.57■□□□□ 0.4
SHMT1-204ENST00000395682 APRG1Q8IVJ8 170 aa17.57■□□□□ 0.4
SHMT1-204ENST00000395682 GRAMD2BQ96HH9 432 aa17.57■□□□□ 0.4
SHMT1-204ENST00000395682 TBC1D24Q9ULP9 559 aa17.57■□□□□ 0.4
SHMT1-204ENST00000395682 STRAPQ9Y3F4 350 aaKnown RBP17.57■□□□□ 0.4
SHMT1-204ENST00000395682 U3KQE9 123 aa17.57■□□□□ 0.4
SHMT1-204ENST00000395682 H2AFB2P0C5Z0 115 aa17.56■□□□□ 0.4
SHMT1-204ENST00000395682 ZNF846Q147U1 533 aa17.56■□□□□ 0.4
SHMT1-204ENST00000395682 USF2Q15853 346 aaPredicted RBP17.56■□□□□ 0.4
SHMT1-204ENST00000395682 IAH1Q2TAA2 248 aaPredicted RBP17.56■□□□□ 0.4
SHMT1-204ENST00000395682 WDR12Q9GZL7 423 aaKnown RBP17.56■□□□□ 0.4
SHMT1-204ENST00000395682 GSKIPQ9P0R6 139 aa17.56■□□□□ 0.4
SHMT1-204ENST00000395682 IGKV1D-37A0A075B6S9 117 aa17.55■□□□□ 0.4
SHMT1-204ENST00000395682 H3BP45 60 aa17.55■□□□□ 0.4
SHMT1-204ENST00000395682 ZNF90Q03938 601 aa17.55■□□□□ 0.4
SHMT1-204ENST00000395682 ASAH1Q13510 395 aa17.55■□□□□ 0.4
SHMT1-204ENST00000395682 OR51G1Q8NGK1 321 aa17.55■□□□□ 0.4
SHMT1-204ENST00000395682 SEC22CQ9BRL7 303 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms