RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 FNDC10F2Z333 226 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 TBX6O95947 436 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-206ENST00000367253 DLX6P56179 175 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 VN1R4Q7Z5H5 301 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 ABHD14BQ96IU4 210 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 SDHCQ99643 169 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-206ENST00000367253 SIP14410 1827 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 A0A1W2PPE3 182 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 IQCF6A8MYZ5 107 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 IGHV4-39P01824 125 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 PPBPP02775 128 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 LEPP41159 167 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 ZFP36L1Q07352 338 aaKnown RBP7.26□□□□□ -1.25
SYNE1-206ENST00000367253 KIR2DL4Q99706 377 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 KLK15Q9H2R5 256 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 PHLDA3Q9Y5J5 127 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 ZGRF1Q86YA3 2104 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 SHROOM3Q8TF72 1996 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 PATE4P0C8F1 98 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 Q0VFX4 171 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 TMEM170BQ5T4T1 132 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 TMEM219Q86XT9 240 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 PPP1R3EQ9H7J1 279 aa7.26□□□□□ -1.25
SYNE1-206ENST00000367253 KNCNA6PVL3 124 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 GZMBP10144 247 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 HBBP68871 147 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 PSG4Q00888 419 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 C10orf128Q5T292 105 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 FAM19A2Q8N3H0 131 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 AQP10Q96PS8 301 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 IGLV3-16A0A075B6K0 115 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 IGKV3D-11A0A0A0MRZ8 115 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 TRAV13-1A0A0B4J241 112 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 IGHV2OR16-5A0A0B4J2B6 119 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 CENPVL1A0A0U1RR11 272 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 CENPVL3A0A0U1RRI6 287 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 IGKV3-11P04433 115 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 CBLN1P23435 193 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 C9orf40Q8IXQ3 194 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 ZNF474Q6S9Z5 364 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-206ENST00000367253 TSPAN2O60636 221 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 CRYGSP22914 178 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 NOTCH2Q04721 2471 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 FAM231DQ6ZW35 169 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 HOGA1Q86XE5 327 aa7.25□□□□□ -1.25
SYNE1-206ENST00000367253 KLF14Q8TD94 323 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-206ENST00000367253 TAF15Q92804 592 aaKnown RBP eCLIP7.25□□□□□ -1.25
SYNE1-206ENST00000367253 ZNF638Q14966 1978 aaKnown RBP7.24□□□□□ -1.25
SYNE1-206ENST00000367253 SPTAN1Q13813 2472 aaKnown RBP7.24□□□□□ -1.25
SYNE1-206ENST00000367253 PAX1P15863 534 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 SUMO2P61956 95 aaKnown RBP7.24□□□□□ -1.25
SYNE1-206ENST00000367253 VKORC1L1Q8N0U8 176 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 SLC22A18ASQ8N1D0 253 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 SRSF12Q8WXF0 261 aaKnown RBP7.24□□□□□ -1.25
SYNE1-206ENST00000367253 THSD7BQ9C0I4 1608 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 PSG2P11465 335 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 SYNJ2BPP57105 145 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 FAM90A1Q86YD7 464 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 C10orf111Q8N326 155 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 PAQR4Q8N4S7 273 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-206ENST00000367253 GPR82Q96P67 336 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 CALYQ9NYX4 217 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 CCDC88CQ9P219 2028 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 RBMY1CP0DJD4 496 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 LCNL1Q6ZST4 164 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 WDYHV1Q96HA8 205 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 IGKV3OR2-268A0A0C4DH90 116 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 A0A0U1RRA0 63 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 NTN3O00634 580 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-206ENST00000367253 DANCRP0C864 163 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 NPC2P61916 151 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 C19orf24Q9BVV8 132 aa7.24□□□□□ -1.25
SYNE1-206ENST00000367253 ZSWIM8A7E2V4 1837 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 PKDREJQ9NTG1 2253 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 COLCA2A8K830 154 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 UPK2O00526 184 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 SERF1AO75920 110 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 KIR3DS1Q14943 382 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 ZNF672Q499Z4 452 aaPredicted RBP7.23□□□□□ -1.25
SYNE1-206ENST00000367253 RNF144BQ7Z419 303 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 FOXA2Q9Y261 457 aaPredicted RBP7.23□□□□□ -1.25
SYNE1-206ENST00000367253 SLC25A20O43772 301 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 IGHV3-13P01766 116 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 IGHV3-7P01780 117 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 OR9G9P0C7N8 305 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 PPDPFLQ8WWR9 84 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 FBXL7Q9UJT9 491 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 ANK1P16157 1881 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 A0A087X0K7 114 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 IGHV3-72A0A0B4J1Y9 119 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 CGB1A6NKQ9 187 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 CTSBP07858 339 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 ID3Q02535 119 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 IRF3Q14653 427 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 ZIC1Q15915 447 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 IL36RNQ9UBH0 155 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 JPT1Q9UK76 154 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 TRBV20OR9-2A0A075B6H5 130 aa7.23□□□□□ -1.25
SYNE1-206ENST00000367253 RBMY1BA6NDE4 496 aaKnown RBP7.23□□□□□ -1.25
SYNE1-206ENST00000367253 RBMY1EA6NEQ0 496 aaKnown RBP7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms