RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 NCOR1P1Q9H4R4 102 aa13.44□□□□□ -0.26
SMARCA4-201ENST00000344626 TCAPO15273 167 aa13.44□□□□□ -0.26
SMARCA4-201ENST00000344626 RELBQ01201 579 aa13.44□□□□□ -0.26
SMARCA4-201ENST00000344626 DEFA6Q01524 100 aa13.44□□□□□ -0.26
SMARCA4-201ENST00000344626 Q6ZS49 121 aa13.44□□□□□ -0.26
SMARCA4-201ENST00000344626 SPOCK3Q9BQ16 436 aa13.44□□□□□ -0.26
SMARCA4-201ENST00000344626 ITGB1BP1O14713 200 aa13.43□□□□□ -0.26
SMARCA4-201ENST00000344626 PAX1P15863 534 aa13.43□□□□□ -0.26
SMARCA4-201ENST00000344626 TFF3Q07654 80 aa13.43□□□□□ -0.26
SMARCA4-201ENST00000344626 TMEM97Q5BJF2 176 aa13.43□□□□□ -0.26
SMARCA4-201ENST00000344626 SPSB3Q6PJ21 355 aa13.43□□□□□ -0.26
SMARCA4-201ENST00000344626 LCNL1Q6ZST4 164 aa13.43□□□□□ -0.26
SMARCA4-201ENST00000344626 FREM1Q5H8C1 2179 aa13.43□□□□□ -0.26
SMARCA4-201ENST00000344626 IGHV1-69DA0A0B4J2H0 117 aa13.43□□□□□ -0.26
SMARCA4-201ENST00000344626 GCGP01275 180 aa13.43□□□□□ -0.26
SMARCA4-201ENST00000344626 IGHV1-69P01742 117 aa13.43□□□□□ -0.26
SMARCA4-201ENST00000344626 MBNL3Q9NUK0 354 aaKnown RBP13.43□□□□□ -0.26
SMARCA4-201ENST00000344626 SELENOKQ9Y6D0 94 aa13.43□□□□□ -0.26
SMARCA4-201ENST00000344626 MT-ND6P03923 174 aa13.43□□□□□ -0.26
SMARCA4-201ENST00000344626 DUX3Q96PT4 197 aa13.43□□□□□ -0.26
SMARCA4-201ENST00000344626 PCDH15Q96QU1 1955 aa13.43□□□□□ -0.26
SMARCA4-201ENST00000344626 SCO1O75880 301 aa13.42□□□□□ -0.26
SMARCA4-201ENST00000344626 PTTG1IPP53801 180 aa13.42□□□□□ -0.26
SMARCA4-201ENST00000344626 TMEM249Q2WGJ8 235 aa13.42□□□□□ -0.26
SMARCA4-201ENST00000344626 ZNF503-AS2A6NEH8 195 aa13.42□□□□□ -0.26
SMARCA4-201ENST00000344626 ZNF343Q6P1L6 599 aa13.42□□□□□ -0.26
SMARCA4-201ENST00000344626 LHFPL5Q8TAF8 219 aa13.42□□□□□ -0.26
SMARCA4-201ENST00000344626 IGHV4-30-2A0A087WSY4 118 aa13.42□□□□□ -0.26
SMARCA4-201ENST00000344626 LRTM2Q8N967 370 aa13.42□□□□□ -0.26
SMARCA4-201ENST00000344626 DKK1O94907 266 aa13.42□□□□□ -0.26
SMARCA4-201ENST00000344626 RNF138Q8WVD3 245 aa13.42□□□□□ -0.26
SMARCA4-201ENST00000344626 TRBV7-1A0A0A6YYK4 115 aa13.41□□□□□ -0.26
SMARCA4-201ENST00000344626 SHISA9B4DS77 424 aa13.41□□□□□ -0.26
SMARCA4-201ENST00000344626 LEPP41159 167 aa13.41□□□□□ -0.26
SMARCA4-201ENST00000344626 LEMD1Q68G75 181 aa13.41□□□□□ -0.26
SMARCA4-201ENST00000344626 CKS2P33552 79 aa13.41□□□□□ -0.26
SMARCA4-201ENST00000344626 DLX1P56177 255 aa13.41□□□□□ -0.26
SMARCA4-201ENST00000344626 C15orf32Q32M92 178 aa13.41□□□□□ -0.26
SMARCA4-201ENST00000344626 Q6ZR03 302 aa13.41□□□□□ -0.26
SMARCA4-201ENST00000344626 LINC01587Q99440 93 aa13.41□□□□□ -0.26
SMARCA4-201ENST00000344626 RPL29P47914 159 aaKnown RBP13.41□□□□□ -0.26
SMARCA4-201ENST00000344626 TEX36Q5VZQ5 186 aa13.41□□□□□ -0.26
SMARCA4-201ENST00000344626 MAP1LC3CQ9BXW4 147 aa13.41□□□□□ -0.26
SMARCA4-201ENST00000344626 HSPB8Q9UJY1 196 aa13.41□□□□□ -0.26
SMARCA4-201ENST00000344626 LMO1P25800 156 aa13.4□□□□□ -0.26
SMARCA4-201ENST00000344626 ASIPP42127 132 aa13.4□□□□□ -0.26
SMARCA4-201ENST00000344626 TP53BP1Q12888 1972 aaPredicted RBP13.4□□□□□ -0.26
SMARCA4-201ENST00000344626 FAM223BA6NKX1 122 aa13.4□□□□□ -0.26
SMARCA4-201ENST00000344626 ID3Q02535 119 aa13.4□□□□□ -0.26
SMARCA4-201ENST00000344626 FAM223AQ8IWN6 122 aa13.4□□□□□ -0.26
SMARCA4-201ENST00000344626 DENND4CQ5VZ89 1909 aa13.4□□□□□ -0.26
SMARCA4-201ENST00000344626 QRFPP83859 136 aa13.4□□□□□ -0.26
SMARCA4-201ENST00000344626 C2orf83Q53S99 150 aa13.4□□□□□ -0.26
SMARCA4-201ENST00000344626 LRRK1Q38SD2 2015 aa13.4□□□□□ -0.26
SMARCA4-201ENST00000344626 IGHV4-61A0A0C4DH41 118 aa13.4□□□□□ -0.26
SMARCA4-201ENST00000344626 ZNF585BQ52M93 769 aa13.4□□□□□ -0.26
SMARCA4-201ENST00000344626 PIP4P2Q8N4L2 257 aa13.4□□□□□ -0.26
SMARCA4-201ENST00000344626 RCC1LQ96I51 464 aaKnown RBP13.4□□□□□ -0.26
SMARCA4-201ENST00000344626 LHFPL1Q86WI0 220 aa13.4□□□□□ -0.27
SMARCA4-201ENST00000344626 H7C1H1 209 aa13.39□□□□□ -0.27
SMARCA4-201ENST00000344626 Q1RN00 199 aa13.39□□□□□ -0.27
SMARCA4-201ENST00000344626 FMC1Q96HJ9 113 aa13.39□□□□□ -0.27
SMARCA4-201ENST00000344626 ZNF56Q15929 161 aa13.39□□□□□ -0.27
SMARCA4-201ENST00000344626 SRSF8Q9BRL6 282 aaKnown RBP13.39□□□□□ -0.27
SMARCA4-201ENST00000344626 VAMP8Q9BV40 100 aa13.39□□□□□ -0.27
SMARCA4-201ENST00000344626 TMEM191AQ9H0A3 160 aa13.39□□□□□ -0.27
SMARCA4-201ENST00000344626 OTORQ9NRC9 128 aa13.39□□□□□ -0.27
SMARCA4-201ENST00000344626 TMEM250H0YL14 139 aa13.39□□□□□ -0.27
SMARCA4-201ENST00000344626 CFHR2P36980 270 aa13.39□□□□□ -0.27
SMARCA4-201ENST00000344626 IQCJQ1A5X6 159 aa13.39□□□□□ -0.27
SMARCA4-201ENST00000344626 C10orf55Q5SWW7 151 aa13.39□□□□□ -0.27
SMARCA4-201ENST00000344626 SIGLEC9Q9Y336 463 aa13.39□□□□□ -0.27
SMARCA4-201ENST00000344626 FAM3BP58499 235 aaPredicted RBP13.38□□□□□ -0.27
SMARCA4-201ENST00000344626 PGLYRP4Q96LB8 373 aa13.38□□□□□ -0.27
SMARCA4-201ENST00000344626 CBY3A6NI87 242 aa13.38□□□□□ -0.27
SMARCA4-201ENST00000344626 CGAP01215 116 aa13.38□□□□□ -0.27
SMARCA4-201ENST00000344626 IGHV4-39P01824 125 aa13.38□□□□□ -0.27
SMARCA4-201ENST00000344626 C19orf54Q5BKX5 351 aa13.38□□□□□ -0.27
SMARCA4-201ENST00000344626 LHFPL4Q7Z7J7 247 aa13.38□□□□□ -0.27
SMARCA4-201ENST00000344626 KIR3DL3Q8N743 410 aa13.38□□□□□ -0.27
SMARCA4-201ENST00000344626 NMBP08949 121 aa13.38□□□□□ -0.27
SMARCA4-201ENST00000344626 AREGP15514 252 aa13.38□□□□□ -0.27
SMARCA4-201ENST00000344626 ELOBQ15370 118 aa13.38□□□□□ -0.27
SMARCA4-201ENST00000344626 RNF166Q96A37 237 aaPredicted RBP13.38□□□□□ -0.27
SMARCA4-201ENST00000344626 NIT2Q9NQR4 276 aa13.38□□□□□ -0.27
SMARCA4-201ENST00000344626 PEX7O00628 323 aa13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 TOMM20LQ6UXN7 152 aa13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 OR10W1Q8NGF6 305 aa13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 SDF2L1Q9HCN8 221 aa13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 MPTX1A8MV57 137 aa13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 GATA2P23769 480 aaPredicted RBP13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 CD81P60033 236 aa13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 PMS2P11Q13670 270 aa13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 ZNF383Q8NA42 475 aa13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 TMEM190Q8WZ59 177 aa13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 Q9H3A6 140 aa13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 TNCP24821 2201 aa13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 HLA-DQA1P01909 254 aa13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 MIR17HGQ75NE6 70 aa13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 SGK494Q96LW2 274 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms