RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 SMDT1Q9H4I9 107 aa12.2□□□□□ -0.46
LIMS1-202ENST00000338045 HSBP1L1C9JCN9 74 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 IGHV3-48P01763 117 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 PEA15Q15121 130 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 CYP2G1PQ6ZSU1 146 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 TMEM219Q86XT9 240 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 FANCD2OSQ96PS1 177 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 FOXC2Q99958 501 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 TCEAL7Q9BRU2 100 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 EIF5A2Q9GZV4 153 aaKnown RBP12.19□□□□□ -0.46
LIMS1-202ENST00000338045 IGLV11-55A0A075B6I3 123 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 TCRBV4S1A1TA0A5B7 111 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 RBFOX3A6NFN3 312 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 H3BUX3 64 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 K7EIM0 57 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 ADCYAP1P18509 176 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 FGF8P55075 233 aaPredicted RBP12.19□□□□□ -0.46
LIMS1-202ENST00000338045 C10orf91Q5T1B1 145 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 C9orf139Q6ZV77 190 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 C22orf15Q8WYQ4 148 aa12.19□□□□□ -0.46
LIMS1-202ENST00000338045 PDZD2O15018 2839 aa12.18□□□□□ -0.46
LIMS1-202ENST00000338045 GCN1Q92616 2671 aaKnown RBP12.18□□□□□ -0.46
LIMS1-202ENST00000338045 ZANQ9Y493 2812 aa12.18□□□□□ -0.46
LIMS1-202ENST00000338045 CSMD1Q96PZ7 3565 aa12.18□□□□□ -0.46
LIMS1-202ENST00000338045 CSPG4Q6UVK1 2322 aa12.18□□□□□ -0.46
LIMS1-202ENST00000338045 EIF3GO75821 320 aaKnown RBP eCLIP12.18□□□□□ -0.46
LIMS1-202ENST00000338045 KLK9Q2XQG4 91 aa12.18□□□□□ -0.46
LIMS1-202ENST00000338045 OR4X1Q8NH49 305 aa12.18□□□□□ -0.46
LIMS1-202ENST00000338045 NANPQ8TBE9 248 aa12.18□□□□□ -0.46
LIMS1-202ENST00000338045 TRGV9Q99603 122 aa12.18□□□□□ -0.46
LIMS1-202ENST00000338045 KLK9Q9UKQ9 250 aa12.18□□□□□ -0.46
LIMS1-202ENST00000338045 A0A1W2PPV4 95 aa12.17□□□□□ -0.46
LIMS1-202ENST00000338045 ZFP92A6NM28 416 aa12.17□□□□□ -0.46
LIMS1-202ENST00000338045 ATP6V0E1O15342 81 aa12.17□□□□□ -0.46
LIMS1-202ENST00000338045 GATA2P23769 480 aaPredicted RBP12.17□□□□□ -0.46
LIMS1-202ENST00000338045 SELENOTP62341 195 aa12.17□□□□□ -0.46
LIMS1-202ENST00000338045 ZNF506Q5JVG8 444 aa12.17□□□□□ -0.46
LIMS1-202ENST00000338045 RARRES2Q99969 163 aa12.17□□□□□ -0.46
LIMS1-202ENST00000338045 PITPNC1Q9UKF7 332 aa12.17□□□□□ -0.46
LIMS1-202ENST00000338045 UNC79Q9P2D8 2635 aa12.17□□□□□ -0.46
LIMS1-202ENST00000338045 PSMB11A5LHX3 300 aa12.17□□□□□ -0.46
LIMS1-202ENST00000338045 HMGB3O15347 200 aaKnown RBP12.17□□□□□ -0.46
LIMS1-202ENST00000338045 CRIP2P52943 208 aaPredicted RBP12.17□□□□□ -0.46
LIMS1-202ENST00000338045 DEFB112Q30KQ8 113 aa12.17□□□□□ -0.46
LIMS1-202ENST00000338045 KHDC3LQ587J8 217 aa12.17□□□□□ -0.46
LIMS1-202ENST00000338045 C16orf82Q7Z2V1 217 aa12.17□□□□□ -0.46
LIMS1-202ENST00000338045 BCL6BQ8N143 479 aaPredicted RBP12.17□□□□□ -0.46
LIMS1-202ENST00000338045 CIARTQ8N365 385 aaPredicted RBP12.17□□□□□ -0.46
LIMS1-202ENST00000338045 FAM110DQ8TAY7 271 aaPredicted RBP12.17□□□□□ -0.46
LIMS1-202ENST00000338045 C19orf24Q9BVV8 132 aa12.17□□□□□ -0.46
LIMS1-202ENST00000338045 SEC11CQ9BY50 192 aa12.17□□□□□ -0.46
LIMS1-202ENST00000338045 GNG13Q9P2W3 67 aa12.17□□□□□ -0.46
LIMS1-202ENST00000338045 CARHSP1Q9Y2V2 147 aaKnown RBP12.17□□□□□ -0.46
LIMS1-202ENST00000338045 IGHV3-21A0A0B4J1V1 117 aa12.16□□□□□ -0.46
LIMS1-202ENST00000338045 LOC102723971A0A1B0GUV8 181 aa12.16□□□□□ -0.46
LIMS1-202ENST00000338045 MDFIC2A0A1B0GVS7 189 aa12.16□□□□□ -0.46
LIMS1-202ENST00000338045 M0QZK8 103 aa12.16□□□□□ -0.46
LIMS1-202ENST00000338045 STAG3L2P0CL84 134 aa12.16□□□□□ -0.46
LIMS1-202ENST00000338045 STAG3L3P0CL85 134 aa12.16□□□□□ -0.46
LIMS1-202ENST00000338045 RHOBP62745 196 aa12.16□□□□□ -0.46
LIMS1-202ENST00000338045 ZNF90Q03938 601 aa12.16□□□□□ -0.46
LIMS1-202ENST00000338045 ICAM4Q14773 271 aa12.16□□□□□ -0.46
LIMS1-202ENST00000338045 HAGHQ16775 308 aa12.16□□□□□ -0.46
LIMS1-202ENST00000338045 AKIRIN2Q53H80 203 aa12.16□□□□□ -0.46
LIMS1-202ENST00000338045 SEPSECSQ9HD40 501 aaKnown RBP12.16□□□□□ -0.46
LIMS1-202ENST00000338045 TNFRSF19Q9NS68 423 aa12.16□□□□□ -0.46
LIMS1-202ENST00000338045 SH2D7A6NKC9 451 aaPredicted RBP12.15□□□□□ -0.46
LIMS1-202ENST00000338045 LINC01548A6NM66 108 aa12.15□□□□□ -0.46
LIMS1-202ENST00000338045 SFTA3P0C7M3 94 aa12.15□□□□□ -0.46
LIMS1-202ENST00000338045 BCL2P10415 239 aa12.15□□□□□ -0.46
LIMS1-202ENST00000338045 DEFA6Q01524 100 aa12.15□□□□□ -0.46
LIMS1-202ENST00000338045 LY6EQ16553 131 aa12.15□□□□□ -0.46
LIMS1-202ENST00000338045 HSPB1P04792 205 aaKnown RBP12.14□□□□□ -0.47
LIMS1-202ENST00000338045 OR5G3P0C626 314 aa12.14□□□□□ -0.47
LIMS1-202ENST00000338045 IGLC1P0CG04 106 aa12.14□□□□□ -0.47
LIMS1-202ENST00000338045 UNQ5815/PRO19632Q6UWF5 114 aa12.14□□□□□ -0.47
LIMS1-202ENST00000338045 OR5T1Q8NG75 326 aa12.14□□□□□ -0.47
LIMS1-202ENST00000338045 GATAD1Q8WUU5 269 aa12.14□□□□□ -0.47
LIMS1-202ENST00000338045 TMEM37Q8WXS4 190 aa12.14□□□□□ -0.47
LIMS1-202ENST00000338045 THYN1Q9P016 225 aa12.14□□□□□ -0.47
LIMS1-202ENST00000338045 ZFHX3Q15911 3703 aa12.14□□□□□ -0.47
LIMS1-202ENST00000338045 APOC3P02656 99 aa12.14□□□□□ -0.47
LIMS1-202ENST00000338045 PPT1P50897 306 aa12.14□□□□□ -0.47
LIMS1-202ENST00000338045 C19orf54Q5BKX5 351 aa12.14□□□□□ -0.47
LIMS1-202ENST00000338045 SLC35E3Q7Z769 313 aa12.14□□□□□ -0.47
LIMS1-202ENST00000338045 ZNF48Q96MX3 618 aaPredicted RBP12.14□□□□□ -0.47
LIMS1-202ENST00000338045 TMUB1Q9BVT8 246 aa12.14□□□□□ -0.47
LIMS1-202ENST00000338045 SLC35B3Q9H1N7 401 aa12.14□□□□□ -0.47
LIMS1-202ENST00000338045 TMPRSS5Q9H3S3 457 aa12.14□□□□□ -0.47
LIMS1-202ENST00000338045 MLXQ9UH92 298 aa12.14□□□□□ -0.47
LIMS1-202ENST00000338045 IFNA1P01562 189 aa12.13□□□□□ -0.47
LIMS1-202ENST00000338045 HIST1H1BP16401 226 aaKnown RBP12.13□□□□□ -0.47
LIMS1-202ENST00000338045 PSMB3P49720 205 aa12.13□□□□□ -0.47
LIMS1-202ENST00000338045 ECSCRQ19T08 205 aa12.13□□□□□ -0.47
LIMS1-202ENST00000338045 FAM78BQ5VT40 261 aa12.13□□□□□ -0.47
LIMS1-202ENST00000338045 SPATA31B1PQ5VZV4 182 aa12.13□□□□□ -0.47
LIMS1-202ENST00000338045 RBMS3Q6XE24 437 aaKnown RBP12.13□□□□□ -0.47
LIMS1-202ENST00000338045 VAX2Q9UIW0 290 aa12.13□□□□□ -0.47
LIMS1-202ENST00000338045 FUT9Q9Y231 359 aa12.13□□□□□ -0.47
LIMS1-202ENST00000338045 ITPR3Q14573 2671 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms