RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 COMMD1Q8N668 190 aa11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 RCC1LQ96I51 464 aaKnown RBP11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 SMR3AQ99954 134 aa11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 VSIRQ9H7M9 311 aa11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 TNFRSF19Q9NS68 423 aa11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 GAR1Q9NY12 217 aaKnown RBP11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 C21orf62Q9NYP8 219 aa11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 FBXL7Q9UJT9 491 aa11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 HIVEP1P15822 2718 aa11.65□□□□□ -0.55
CCDC88C-202ENST00000334448 PSMB11A5LHX3 300 aa11.64□□□□□ -0.55
CCDC88C-202ENST00000334448 ZFP92A6NM28 416 aa11.64□□□□□ -0.55
CCDC88C-202ENST00000334448 OR2J3O76001 311 aa11.64□□□□□ -0.55
CCDC88C-202ENST00000334448 IGKV1-17P01599 117 aa11.64□□□□□ -0.55
CCDC88C-202ENST00000334448 IGHG4P01861 327 aa11.64□□□□□ -0.55
CCDC88C-202ENST00000334448 FABP1P07148 127 aa11.64□□□□□ -0.55
CCDC88C-202ENST00000334448 PLP1P60201 277 aa11.64□□□□□ -0.55
CCDC88C-202ENST00000334448 RHOGP84095 191 aa11.64□□□□□ -0.55
CCDC88C-202ENST00000334448 ZNF726P1Q15940 193 aa11.64□□□□□ -0.55
CCDC88C-202ENST00000334448 OR10G4Q8NGN3 311 aa11.64□□□□□ -0.55
CCDC88C-202ENST00000334448 OR10G9Q8NGN4 311 aa11.64□□□□□ -0.55
CCDC88C-202ENST00000334448 OR10G7Q8NGN6 311 aa11.64□□□□□ -0.55
CCDC88C-202ENST00000334448 ZNF502Q8TBZ5 544 aa11.64□□□□□ -0.55
CCDC88C-202ENST00000334448 PFDN2Q9UHV9 154 aa11.64□□□□□ -0.55
CCDC88C-202ENST00000334448 MTORP42345 2549 aa11.64□□□□□ -0.55
CCDC88C-202ENST00000334448 CTXND1A0A1B0GTU2 59 aa11.63□□□□□ -0.55
CCDC88C-202ENST00000334448 MFSD2BA6NFX1 497 aa11.63□□□□□ -0.55
CCDC88C-202ENST00000334448 IGHV3-48P01763 117 aa11.63□□□□□ -0.55
CCDC88C-202ENST00000334448 HBE1P02100 147 aa11.63□□□□□ -0.55
CCDC88C-202ENST00000334448 RNASE1P07998 156 aaKnown RBP11.63□□□□□ -0.55
CCDC88C-202ENST00000334448 H2AFB1P0C5Y9 115 aa11.63□□□□□ -0.55
CCDC88C-202ENST00000334448 HILS1P60008 231 aa11.63□□□□□ -0.55
CCDC88C-202ENST00000334448 YPEL3P61236 119 aaPredicted RBP11.63□□□□□ -0.55
CCDC88C-202ENST00000334448 ZNF616Q08AN1 781 aa11.63□□□□□ -0.55
CCDC88C-202ENST00000334448 PMS2P11Q13670 270 aa11.63□□□□□ -0.55
CCDC88C-202ENST00000334448 C15orf32Q32M92 178 aa11.63□□□□□ -0.55
CCDC88C-202ENST00000334448 SPSB3Q6PJ21 355 aa11.63□□□□□ -0.55
CCDC88C-202ENST00000334448 BPIFCQ8NFQ6 507 aa11.63□□□□□ -0.55
CCDC88C-202ENST00000334448 USMG5Q96IX5 58 aa11.63□□□□□ -0.55
CCDC88C-202ENST00000334448 ACTR3CQ9C0K3 210 aaPredicted RBP11.63□□□□□ -0.55
CCDC88C-202ENST00000334448 ESM1Q9NQ30 184 aa11.63□□□□□ -0.55
CCDC88C-202ENST00000334448 NSD1Q96L73 2696 aaPredicted RBP11.62□□□□□ -0.55
CCDC88C-202ENST00000334448 TRBV7-1A0A0A6YYK4 115 aa11.62□□□□□ -0.55
CCDC88C-202ENST00000334448 RAB19A4D1S5 217 aa11.62□□□□□ -0.55
CCDC88C-202ENST00000334448 SCGB2A1O75556 95 aa11.62□□□□□ -0.55
CCDC88C-202ENST00000334448 ZNF90Q03938 601 aa11.62□□□□□ -0.55
CCDC88C-202ENST00000334448 RNF152Q8N8N0 203 aa11.62□□□□□ -0.55
CCDC88C-202ENST00000334448 ZNF418Q8TF45 676 aaPredicted RBP11.62□□□□□ -0.55
CCDC88C-202ENST00000334448 GATAD1Q8WUU5 269 aa11.62□□□□□ -0.55
CCDC88C-202ENST00000334448 NOL4LQ96MY1 436 aaPredicted RBP11.62□□□□□ -0.55
CCDC88C-202ENST00000334448 RNF2Q99496 336 aa11.62□□□□□ -0.55
CCDC88C-202ENST00000334448 IGHV3-21A0A0B4J1V1 117 aa11.61□□□□□ -0.55
CCDC88C-202ENST00000334448 TEX46H3BTG2 121 aa11.61□□□□□ -0.55
CCDC88C-202ENST00000334448 TOMM40O96008 361 aa11.61□□□□□ -0.55
CCDC88C-202ENST00000334448 OR5G3P0C626 314 aa11.61□□□□□ -0.55
CCDC88C-202ENST00000334448 PSMB8P28062 276 aa11.61□□□□□ -0.55
CCDC88C-202ENST00000334448 CDC34P49427 236 aaPredicted RBP11.61□□□□□ -0.55
CCDC88C-202ENST00000334448 GCSAMLQ5JQS6 135 aa11.61□□□□□ -0.55
CCDC88C-202ENST00000334448 COMMD7Q86VX2 200 aa11.61□□□□□ -0.55
CCDC88C-202ENST00000334448 MYOZ3Q8TDC0 251 aa11.61□□□□□ -0.55
CCDC88C-202ENST00000334448 MARC2Q969Z3 335 aa11.61□□□□□ -0.55
CCDC88C-202ENST00000334448 EEF1AKMT3Q96AZ1 226 aa11.61□□□□□ -0.55
CCDC88C-202ENST00000334448 PFDN5Q99471 154 aa11.61□□□□□ -0.55
CCDC88C-202ENST00000334448 ELOA3CA0A087WX78 387 aaPredicted RBP11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 MAP1LC3B2A6NCE7 125 aa11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 GNG7O60262 68 aa11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 OR2C1O95371 312 aa11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 RHOBP62745 196 aa11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 FAM209BQ5JX69 171 aa11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 UQCC3Q6UW78 93 aa11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 SSX7Q7RTT5 188 aa11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 SLC7A5P1Q8MH63 180 aa11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 OR1L4Q8NGR5 311 aa11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 RAB24Q969Q5 203 aa11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 CCDC140Q96MF4 163 aa11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 JMJD8Q96S16 334 aa11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 MRPL32Q9BYC8 188 aaKnown RBP11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 MAP1LC3BQ9GZQ8 125 aa11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 HRH4Q9H3N8 390 aa11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 LINC00527Q9UJ94 153 aa11.6□□□□□ -0.55
CCDC88C-202ENST00000334448 ZFHX3Q15911 3703 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 A0A0G2JLM5 398 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 TRGV3P03979 118 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 ELANEP08246 267 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 CTSGP08311 255 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 STAG3L2P0CL84 134 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 STAG3L3P0CL85 134 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 GATA2P23769 480 aaPredicted RBP11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 ATP5G2Q06055 141 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 FOXE3Q13461 319 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 TMEM95Q3KNT9 176 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 TIGITQ495A1 244 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 FAM122CQ6P4D5 195 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 SFT2D1Q8WV19 159 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 SLC25A22Q9H936 323 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 ZNF355PQ9NSJ1 428 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 SERTAD4Q9NUC0 356 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 FUT9Q9Y231 359 aa11.59□□□□□ -0.55
CCDC88C-202ENST00000334448 FAM181BA6NEQ2 426 aa11.58□□□□□ -0.56
CCDC88C-202ENST00000334448 ATP6V1G1O75348 118 aa11.58□□□□□ -0.56
CCDC88C-202ENST00000334448 RD3LP0DJH9 198 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms