RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 A0A0J9YY99 117 aa6.41□□□□□ -1.38
SCN9A-201ENST00000303354 SSBP2P81877 361 aaPredicted RBP6.41□□□□□ -1.38
SCN9A-201ENST00000303354 ZNF876PQ49A33 203 aa6.41□□□□□ -1.38
SCN9A-201ENST00000303354 GAFA1Q96PS6 74 aa6.41□□□□□ -1.38
SCN9A-201ENST00000303354 ZNF646O15015 1829 aaPredicted RBP6.41□□□□□ -1.38
SCN9A-201ENST00000303354 ZNF660Q6AZW8 331 aaPredicted RBP6.41□□□□□ -1.38
SCN9A-201ENST00000303354 A0A1B0GTI1 187 aa6.41□□□□□ -1.38
SCN9A-201ENST00000303354 LHBP01229 141 aa6.41□□□□□ -1.38
SCN9A-201ENST00000303354 LRRC37AA6NMS7 1700 aa6.41□□□□□ -1.38
SCN9A-201ENST00000303354 INS-IGF2F8WCM5 200 aa6.4□□□□□ -1.38
SCN9A-201ENST00000303354 H7C1H1 209 aa6.4□□□□□ -1.38
SCN9A-201ENST00000303354 INSP01308 110 aa6.4□□□□□ -1.38
SCN9A-201ENST00000303354 GATD1Q8NB37 220 aa6.4□□□□□ -1.38
SCN9A-201ENST00000303354 CKS1BP61024 79 aa6.4□□□□□ -1.38
SCN9A-201ENST00000303354 DEFB136Q30KP8 78 aa6.4□□□□□ -1.38
SCN9A-201ENST00000303354 RBM38Q9H0Z9 239 aaKnown RBP6.4□□□□□ -1.38
SCN9A-201ENST00000303354 TMEM238LA0A1B0GVL6 79 aa6.4□□□□□ -1.38
SCN9A-201ENST00000303354 LINC00862A6NCI5 91 aa6.4□□□□□ -1.38
SCN9A-201ENST00000303354 A6NJY4 79 aa6.4□□□□□ -1.38
SCN9A-201ENST00000303354 FAM74A7A6NL05 159 aa6.4□□□□□ -1.38
SCN9A-201ENST00000303354 BUB1B-PAK6H3BSN5 160 aa6.4□□□□□ -1.38
SCN9A-201ENST00000303354 HOXA5P20719 270 aa6.4□□□□□ -1.38
SCN9A-201ENST00000303354 PSG8Q9UQ74 426 aa6.4□□□□□ -1.38
SCN9A-201ENST00000303354 NINQ8N4C6 2090 aa6.4□□□□□ -1.38
SCN9A-201ENST00000303354 TRAV13-1A0A0B4J241 112 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 LINC00614P0C842 121 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 C1QL4Q86Z23 238 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 SRSF2Q01130 221 aaKnown RBP6.4□□□□□ -1.39
SCN9A-201ENST00000303354 TEX38Q6PEX7 206 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 CST9LQ9H4G1 147 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 CNTRLQ7Z7A1 2325 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 IGLV3-12A0A075B6K2 115 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 GAGE12BA1L429 117 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 GAGE10A6NGK3 116 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 GAGE7O76087 117 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 HBDP02042 147 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 GAGE12FP0CL80 117 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 GAGE12GP0CL81 117 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 GAGE12IP0CL82 117 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 C20orf204Q6ZNR8 217 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 IGKV1-27A0A075B6S5 117 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 FABP5P3A8MUU1 101 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 CD300EQ496F6 205 aaPredicted RBP6.4□□□□□ -1.39
SCN9A-201ENST00000303354 S100A7L2Q5SY68 101 aa6.4□□□□□ -1.39
SCN9A-201ENST00000303354 SRRM4A7MD48 611 aaKnown RBP6.39□□□□□ -1.39
SCN9A-201ENST00000303354 HIGD1CA8MV81 97 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 YPEL1O60688 119 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 MDS2Q8NDY4 140 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 YPEL2Q96QA6 119 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 MCRIP2Q9BUT9 160 aaKnown RBP6.39□□□□□ -1.39
SCN9A-201ENST00000303354 GAGE12JA6NER3 117 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 DUSP14O95147 198 aaKnown RBP6.39□□□□□ -1.39
SCN9A-201ENST00000303354 PSG1P11464 419 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 GAGE1Q13065 139 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 GAGE4Q13068 117 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 GAGE5Q13069 117 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 GAGE13Q4V321 117 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 ZNF600Q6ZNG1 722 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 MRPS18CQ9Y3D5 142 aaKnown RBP6.39□□□□□ -1.39
SCN9A-201ENST00000303354 SMKR1H3BMG3 65 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 SPINK13Q1W4C9 94 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 SEPSECSQ9HD40 501 aaKnown RBP6.39□□□□□ -1.39
SCN9A-201ENST00000303354 C15orf61A6NNL5 157 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 WT1P19544 449 aaPredicted RBP6.39□□□□□ -1.39
SCN9A-201ENST00000303354 HGFACQ04756 655 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 MRPL16Q9NX20 251 aaKnown RBP6.39□□□□□ -1.39
SCN9A-201ENST00000303354 RBMY1BA6NDE4 496 aaKnown RBP6.39□□□□□ -1.39
SCN9A-201ENST00000303354 RBMY1EA6NEQ0 496 aaKnown RBP6.39□□□□□ -1.39
SCN9A-201ENST00000303354 ERVH48-1M5A8F1 160 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 RBMY1DP0C7P1 496 aaKnown RBP6.39□□□□□ -1.39
SCN9A-201ENST00000303354 RBMY1A1P0DJD3 496 aaKnown RBP6.39□□□□□ -1.39
SCN9A-201ENST00000303354 RBMY1CP0DJD4 496 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 RPP21Q9H633 154 aaKnown RBP6.39□□□□□ -1.39
SCN9A-201ENST00000303354 SCN8AQ9UQD0 1980 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 PUSL1Q8N0Z8 303 aaKnown RBP6.39□□□□□ -1.39
SCN9A-201ENST00000303354 PLXNA1Q9UIW2 1896 aa6.39□□□□□ -1.39
SCN9A-201ENST00000303354 LINC00299Q6ZSB3 139 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 OR11H1Q8NG94 326 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 ZNF414Q96IQ9 312 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 Q9HAA7 133 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 DLEC1Q9Y238 1755 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 FOLR2P14207 255 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 PAX1P15863 534 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 FOXL1Q12952 345 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 Q6ZS92 163 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 ABCA7Q8IZY2 2146 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 HS3ST6Q96QI5 342 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 RHPN1-AS1Q9BWJ2 59 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 SAMD13Q5VXD3 122 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 STPG2Q8N412 459 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 FMC1Q96HJ9 113 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 TM2D1Q9BX74 207 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 M0QZK8 103 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 ATP6V0E1O15342 81 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 COQ2Q96H96 371 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 UNC13CQ8NB66 2214 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 IFI27P40305 119 aaPredicted RBP6.38□□□□□ -1.39
SCN9A-201ENST00000303354 C1orf159Q96HA4 380 aa6.38□□□□□ -1.39
SCN9A-201ENST00000303354 RCC1LQ96I51 464 aaKnown RBP6.38□□□□□ -1.39
SCN9A-201ENST00000303354 SBF2Q86WG5 1849 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 157.2 ms