RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 RNASE7Q9H1E1 156 aaKnown RBP8.31□□□□□ -1.08
COL6A3-201ENST00000295550 DLL3Q9NYJ7 618 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 GATAD1Q8WUU5 269 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 TEX45Q8NA69 505 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 DLX4Q92988 240 aaPredicted RBP8.31□□□□□ -1.08
COL6A3-201ENST00000295550 PIMREGQ9BSJ6 248 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 WDR87Q6ZQQ6 2873 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 IGKV3D-20A0A0C4DH25 116 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 IFNL4K9M1U5 179 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 NUTF2P61970 127 aaKnown RBP8.31□□□□□ -1.08
COL6A3-201ENST00000295550 NPIPB3Q92617 1050 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 SPSB2Q99619 263 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 DCTN5Q9BTE1 182 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 MYO9AB2RTY4 2548 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 HBDP02042 147 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 ERVK11-1P61568 191 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 MRPL20Q9BYC9 149 aaKnown RBP8.31□□□□□ -1.08
COL6A3-201ENST00000295550 DEFB124Q8NES8 71 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 IFI27P40305 119 aaPredicted RBP8.3□□□□□ -1.08
COL6A3-201ENST00000295550 LHFPL4Q7Z7J7 247 aa8.3□□□□□ -1.08
COL6A3-201ENST00000295550 CEP192Q8TEP8 1941 aa8.3□□□□□ -1.08
COL6A3-201ENST00000295550 IGHV3-66A0A0C4DH42 116 aa8.3□□□□□ -1.08
COL6A3-201ENST00000295550 NBEAP1P0C6P0 100 aa8.3□□□□□ -1.08
COL6A3-201ENST00000295550 FAM89BQ8N5H3 189 aa8.3□□□□□ -1.08
COL6A3-201ENST00000295550 HIST1H2BLQ99880 126 aa8.3□□□□□ -1.08
COL6A3-201ENST00000295550 TECTAO75443 2155 aa8.3□□□□□ -1.08
COL6A3-201ENST00000295550 SSBP2P81877 361 aaPredicted RBP8.3□□□□□ -1.08
COL6A3-201ENST00000295550 TMEM30BQ3MIR4 351 aa8.3□□□□□ -1.08
COL6A3-201ENST00000295550 VWCEQ96DN2 955 aa8.3□□□□□ -1.08
COL6A3-201ENST00000295550 NXT2Q9NPJ8 142 aaKnown RBP8.3□□□□□ -1.08
COL6A3-201ENST00000295550 CACNA1AO00555 2505 aa8.3□□□□□ -1.08
COL6A3-201ENST00000295550 DRAM1Q8N682 238 aa8.3□□□□□ -1.08
COL6A3-201ENST00000295550 HS3ST3B1Q9Y662 390 aa8.3□□□□□ -1.08
COL6A3-201ENST00000295550 CCL21O00585 134 aa8.3□□□□□ -1.08
COL6A3-201ENST00000295550 IGKCP01834 107 aa8.3□□□□□ -1.08
COL6A3-201ENST00000295550 MRAPQ8TCY5 172 aa8.3□□□□□ -1.08
COL6A3-201ENST00000295550 CHCHD1Q96BP2 118 aaKnown RBP8.3□□□□□ -1.08
COL6A3-201ENST00000295550 CHTOPQ9Y3Y2 248 aaKnown RBP8.3□□□□□ -1.08
COL6A3-201ENST00000295550 FGF16O43320 207 aa8.3□□□□□ -1.08
COL6A3-201ENST00000295550 MSGN1A6NI15 193 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 IGHV3-35A0A0C4DH35 117 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 SPEM2Q0P670 501 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 IGKV1D-43A0A0B4J1Z2 117 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 EVI2AP22794 236 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 SRSF1Q07955 248 aaKnown RBP eCLIP8.29□□□□□ -1.08
COL6A3-201ENST00000295550 TMEM171Q8WVE6 324 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 PILRBQ9UKJ0 227 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 SPINK8P0C7L1 97 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 C1QL2Q7Z5L3 287 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 C18orf12Q96KH6 178 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 TMEM238C9JI98 176 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 CDK2AP2O75956 126 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 GNG5P63218 68 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 OR9G4Q8NGQ1 327 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 IGFBP2P18065 325 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 PRTN3P24158 256 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 GFI1BQ5VTD9 330 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 OR52E5Q8NH55 327 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 OR9G1Q8NH87 305 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 GNB1LQ9BYB4 327 aa8.29□□□□□ -1.08
COL6A3-201ENST00000295550 IGHV3-23P01764 117 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 TUBA4BQ9H853 241 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 JPT1Q9UK76 154 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 FOXA2Q9Y261 457 aaPredicted RBP8.28□□□□□ -1.08
COL6A3-201ENST00000295550 CD28P10747 220 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 CFPP27918 469 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 LY6EQ16553 131 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 TMEM86BQ8N661 226 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 OCIAD2Q56VL3 154 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 C1orf122Q6ZSJ8 110 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 ZNF688P0C7X2 276 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 ADAMTS9Q9P2N4 1935 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 LAGE3Q14657 143 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 RTN4RL2Q86UN3 420 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 ATP5G3P48201 142 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 S100A7L2Q5SY68 101 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 ORMDL2Q53FV1 153 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 C1QTNF5Q9BXJ0 243 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 REG4Q9BYZ8 158 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 IFI27L2Q9H2X8 130 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 TIAF1O95411 115 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 HIST3H2BBQ8N257 126 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 TMEM186Q96B77 213 aa8.28□□□□□ -1.08
COL6A3-201ENST00000295550 ZNHIT1O43257 154 aa8.27□□□□□ -1.08
COL6A3-201ENST00000295550 ERG28Q9UKR5 140 aa8.27□□□□□ -1.08
COL6A3-201ENST00000295550 IGLV3-12A0A075B6K2 115 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 LOC105371242A0A075B767 164 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 TNFSF13O75888 250 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 TRGV3P03979 118 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 MST1P26927 711 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 MRPL52Q86TS9 123 aaKnown RBP8.27□□□□□ -1.09
COL6A3-201ENST00000295550 RNF126Q9BV68 326 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 ASCL2Q99929 193 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 FAM214BQ7L5A3 538 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 CST9LQ9H4G1 147 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 OTORQ9NRC9 128 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 IGHV3-64A0A075B6Q5 118 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 UCP1P25874 307 aa8.27□□□□□ -1.09
COL6A3-201ENST00000295550 RSPO3Q9BXY4 272 aaPredicted RBP8.27□□□□□ -1.09
COL6A3-201ENST00000295550 CLPSP04118 112 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms