RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 FAM89BQ8N5H3 189 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 NPCDR1Q9BY65 106 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 MSRB2Q9Y3D2 182 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 MGST3O14880 152 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 CTAG2O75638 210 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 NDUFA3O95167 84 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 IGHV3-9P01782 118 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 IFITM1P13164 125 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 LPAR6P43657 344 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 PSG6Q00889 435 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 COL10A1Q03692 680 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 NSUN5P1Q3KNT7 163 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 Q6AWC8 147 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 SDF2Q99470 211 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 DPM3Q9P2X0 92 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 MTFP1Q9UDX5 166 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 HIGD1AQ9Y241 93 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 BRWD3Q6RI45 1802 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 A0A0G2JMM0 328 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 A0A1W2PPB8 328 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 KIR3DP1A8MWS1 328 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 VCYO14598 125 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 HOXA5P20719 270 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 CD300CQ08708 224 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 ACSF3Q4G176 576 aaPredicted RBP2.38□□□□□ -2.03
SCN1A-219ENST00000641575 SPINK9Q5DT21 86 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 EPDR1Q9UM22 224 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 ITGB1BP1O14713 200 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 WNT2P09544 360 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 P2RY4P51582 365 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 CDK5R1Q15078 307 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF585BQ52M93 769 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 PMS2CLQ68D20 193 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 OTOSQ8NHW6 89 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 KLF16Q9BXK1 252 aaPredicted RBP2.38□□□□□ -2.03
SCN1A-219ENST00000641575 NEU3Q9UQ49 428 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 ZAR1LA6NP61 321 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 MOSP00540 346 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 RCC1P18754 421 aaPredicted RBP2.38□□□□□ -2.03
SCN1A-219ENST00000641575 CEACAM16Q2WEN9 425 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 C9orf50Q5SZB4 431 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 GUSBP11Q6P575 273 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 Q6ZS52 159 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 ST20Q9HBF5 79 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 NRXN3Q9Y4C0 1643 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 ADAMTSL1Q8N6G6 1762 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 F6UB75 175 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 J3KT08 172 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 MDKP21741 143 aaPredicted RBP2.38□□□□□ -2.03
SCN1A-219ENST00000641575 FGF14Q92915 247 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 IGKV3D-15A0A087WSY6 115 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 OOSP1A8MZH6 123 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 TRDCB7Z8K6 153 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 OR2H2O95918 312 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 IGKV3-15P01624 115 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 CTSDP07339 412 aaPredicted RBP2.37□□□□□ -2.03
SCN1A-219ENST00000641575 GPX2P18283 190 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 LTBRP36941 435 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF121P58317 390 aaPredicted RBP2.37□□□□□ -2.03
SCN1A-219ENST00000641575 ATP6V0BQ99437 205 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 CLEC7AQ9BXN2 247 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 FGFBP2Q9BYJ0 223 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 TLNRD1Q9H1K6 362 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 CTDSPLO15194 276 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 TRGV3P03979 118 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 CBLN1P23435 193 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 DIAPH2-AS1Q14236 149 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 C6orf226Q5I0X4 101 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 H1FOOQ8IZA3 346 aaPredicted RBP2.37□□□□□ -2.03
SCN1A-219ENST00000641575 EIF4EBP3O60516 100 aaPredicted RBP2.37□□□□□ -2.03
SCN1A-219ENST00000641575 SNAI1O95863 264 aaPredicted RBP2.37□□□□□ -2.03
SCN1A-219ENST00000641575 OR9G9P0C7N8 305 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 CALYQ9NYX4 217 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 A0A1B0GTH9 108 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 LIPT2A6NK58 231 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 C5orf67F2Z3F1 127 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 CFHR2P36980 270 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 PMELP40967 661 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 SRSF2Q01130 221 aaKnown RBP2.37□□□□□ -2.03
SCN1A-219ENST00000641575 SP6Q3SY56 376 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 ASPHD2Q6ICH7 369 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 ADAMTSL5Q6ZMM2 481 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF683Q8IZ20 524 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 SPACA5Q96QH8 159 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 MIXL1Q9H2W2 232 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 TRBV20-1A0A075B6N2 111 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 C3orf85A0A1B0GTC6 90 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 J3KRW8 73 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 TBX6O95947 436 aaPredicted RBP2.37□□□□□ -2.03
SCN1A-219ENST00000641575 CRYBB3P26998 211 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 C2orf83Q53S99 150 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 ACTL10Q5JWF8 245 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 KLK15Q9H2R5 256 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 DAD1P61803 113 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 DEFB103AP81534 67 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 CT55Q8WUE5 264 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 SPXQ9BT56 116 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 FOXQ1Q9C009 403 aa2.37□□□□□ -2.03
SCN1A-219ENST00000641575 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.37□□□□□ -2.03
SCN1A-219ENST00000641575 IL9P15248 144 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms