RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 A0A1B0GV90 55 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 A0A1W2PRD5 423 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 A0A1W2PRF3 423 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 A0A1W2PRM7 423 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 CXorf1O96002 111 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 NPPCP23582 126 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 RHOBP62745 196 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 GNB1P62873 340 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 OR51G1Q8NGK1 321 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 FNDC4Q9H6D8 234 aaPredicted RBP12.55□□□□□ -0.4
CLN3-251ENST00000636853 AKAP6Q13023 2319 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 SSBP2P81877 361 aaPredicted RBP12.55□□□□□ -0.4
CLN3-251ENST00000636853 JOSD1Q15040 202 aaPredicted RBP12.55□□□□□ -0.4
CLN3-251ENST00000636853 FAM78BQ5VT40 261 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 HCP5Q6MZN7 132 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 MMD2Q8IY49 270 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 FRZBQ92765 325 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 SLC35E1Q96K37 410 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 NAT8Q9UHE5 227 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 HILPDAQ9Y5L2 63 aa12.55□□□□□ -0.4
CLN3-251ENST00000636853 IGLC7A0M8Q6 106 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 TMEM8BA6NDV4 472 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 A6NNC1 897 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 TIMM23O14925 209 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 HTR1DP28221 377 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 RPL27AP46776 148 aaKnown RBP12.54□□□□□ -0.4
CLN3-251ENST00000636853 SUB1P53999 127 aaKnown RBP eCLIP12.54□□□□□ -0.4
CLN3-251ENST00000636853 ADIRFQ15847 76 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 TMEM241Q24JQ0 296 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 COA6Q5JTJ3 125 aaKnown RBP12.54□□□□□ -0.4
CLN3-251ENST00000636853 TPTE2P1Q5T6R2 138 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 C19orf35Q6ZS72 473 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 MIR17HGQ75NE6 70 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 CACNG8Q8WXS5 425 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 PACRGQ96M98 296 aaPredicted RBP12.54□□□□□ -0.4
CLN3-251ENST00000636853 FBXL15Q9H469 300 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 AREGP15514 252 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 ZFP36P26651 326 aaKnown RBP12.54□□□□□ -0.4
CLN3-251ENST00000636853 ZNF124Q15973 351 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 GFI1BQ5VTD9 330 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 CYP2G1PQ6ZSU1 146 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 LHFPL4Q7Z7J7 247 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 OR11H6Q8NGC7 330 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 HIST1H2BLQ99880 126 aa12.54□□□□□ -0.4
CLN3-251ENST00000636853 M0R1W7 72 aa12.53□□□□□ -0.4
CLN3-251ENST00000636853 FABP4P15090 132 aa12.53□□□□□ -0.4
CLN3-251ENST00000636853 GCHFRP30047 84 aa12.53□□□□□ -0.4
CLN3-251ENST00000636853 PPP1R27Q86WC6 154 aa12.53□□□□□ -0.4
CLN3-251ENST00000636853 TMEM183AQ8IXX5 376 aa12.53□□□□□ -0.4
CLN3-251ENST00000636853 MRPL36Q9P0J6 103 aaKnown RBP12.53□□□□□ -0.4
CLN3-251ENST00000636853 DPM3Q9P2X0 92 aa12.53□□□□□ -0.4
CLN3-251ENST00000636853 ASH1LQ9NR48 2969 aaKnown RBP12.53□□□□□ -0.4
CLN3-251ENST00000636853 FCN1O00602 326 aa12.53□□□□□ -0.4
CLN3-251ENST00000636853 PRTN3P24158 256 aa12.53□□□□□ -0.4
CLN3-251ENST00000636853 NPIPB3Q92617 1050 aa12.53□□□□□ -0.4
CLN3-251ENST00000636853 MED13LQ71F56 2210 aa12.52□□□□□ -0.4
CLN3-251ENST00000636853 RNF224P0DH78 156 aa12.52□□□□□ -0.41
CLN3-251ENST00000636853 CD24P25063 80 aa12.52□□□□□ -0.41
CLN3-251ENST00000636853 COMPP49747 757 aaPredicted RBP12.52□□□□□ -0.41
CLN3-251ENST00000636853 MFAP2P55001 183 aa12.52□□□□□ -0.41
CLN3-251ENST00000636853 RPL23P62829 140 aaKnown RBP12.52□□□□□ -0.41
CLN3-251ENST00000636853 SSX3Q99909 188 aa12.52□□□□□ -0.41
CLN3-251ENST00000636853 PYGO2Q9BRQ0 406 aa12.52□□□□□ -0.41
CLN3-251ENST00000636853 YTHDF2Q9Y5A9 579 aaKnown RBP12.52□□□□□ -0.41
CLN3-251ENST00000636853 EFNA4P52798 201 aa12.51□□□□□ -0.41
CLN3-251ENST00000636853 SSX2Q16385 188 aa12.51□□□□□ -0.41
CLN3-251ENST00000636853 RUSC1-AS1Q66K80 236 aa12.51□□□□□ -0.41
CLN3-251ENST00000636853 MISP3Q96FF7 219 aa12.51□□□□□ -0.41
CLN3-251ENST00000636853 DERL1Q9BUN8 251 aa12.51□□□□□ -0.41
CLN3-251ENST00000636853 SRD5A3Q9H8P0 318 aa12.51□□□□□ -0.41
CLN3-251ENST00000636853 FUT9Q9Y231 359 aa12.51□□□□□ -0.41
CLN3-251ENST00000636853 WNK2Q9Y3S1 2297 aa12.51□□□□□ -0.41
CLN3-251ENST00000636853 PDE6DO43924 150 aa12.51□□□□□ -0.41
CLN3-251ENST00000636853 NDUFB4O95168 129 aa12.51□□□□□ -0.41
CLN3-251ENST00000636853 VENTXO95231 258 aa12.51□□□□□ -0.41
CLN3-251ENST00000636853 LGALS4P56470 323 aa12.51□□□□□ -0.41
CLN3-251ENST00000636853 PLGLAQ15195 96 aa12.51□□□□□ -0.41
CLN3-251ENST00000636853 VMO1Q7Z5L0 202 aa12.51□□□□□ -0.41
CLN3-251ENST00000636853 A8MWP6 167 aa12.5□□□□□ -0.41
CLN3-251ENST00000636853 ODF3BA8MYP8 253 aa12.5□□□□□ -0.41
CLN3-251ENST00000636853 LCN2P80188 198 aa12.5□□□□□ -0.41
CLN3-251ENST00000636853 ZNF90Q03938 601 aa12.5□□□□□ -0.41
CLN3-251ENST00000636853 TMEM37Q8WXS4 190 aa12.5□□□□□ -0.41
CLN3-251ENST00000636853 NDUFAF3Q9BU61 184 aa12.5□□□□□ -0.41
CLN3-251ENST00000636853 GCGP01275 180 aa12.5□□□□□ -0.41
CLN3-251ENST00000636853 FBLN7Q53RD9 439 aa12.5□□□□□ -0.41
CLN3-251ENST00000636853 CFHR4Q92496 578 aa12.5□□□□□ -0.41
CLN3-251ENST00000636853 CSMD1Q96PZ7 3565 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 IGKV1D-37A0A075B6S9 117 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 IGHV3-21A0A0B4J1V1 117 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 TEX22C9J3V5 150 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 MT-CO2P00403 227 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 CEACAM3P40198 252 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 MMDQ15546 238 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 OR5T1Q8NG75 326 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 SLC25A33Q9BSK2 321 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 SVEP1Q4LDE5 3571 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 CFAP46Q8IYW2 2715 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 ACACBO00763 2458 aa12.49□□□□□ -0.41
CLN3-251ENST00000636853 SCO2A0A1W2PP80 73 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms