RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 ZNF146Q15072 292 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 DEFB110Q30KQ9 67 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 AMTNQ6UX39 209 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 TMEM178AQ8NBL3 297 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 NUP35Q8NFH5 326 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 OR8A1Q8NGG7 326 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 DDB2Q92466 427 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 ZNF799Q96GE5 643 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 TM2D2Q9BX73 214 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 CDIP1Q9H305 208 aa5.64□□□□□ -1.51
SCN1A-213ENST00000636759 IGHV5-51A0A0C4DH38 117 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 NPIPB13A6NJU9 1138 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 B9A039 149 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 NPIPB4C9JG80 1138 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 RRHO14718 337 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 TNFRSF13BO14836 293 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-213ENST00000636759 ZG16O60844 167 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 IGKV1-39P01597 117 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 IGKV1D-39P04432 117 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 FGF6P10767 208 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 HBBP68871 147 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 ALKBH6Q3KRA9 238 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 YRDCQ86U90 279 aaKnown RBP5.63□□□□□ -1.51
SCN1A-213ENST00000636759 GJC3Q8NFK1 279 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 SPTSSAQ969W0 71 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 UBTD1Q9HAC8 227 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 HEYLQ9NQ87 328 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-213ENST00000636759 TMEM167BQ9NRX6 74 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 A0A1W2PQD3 144 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 H3BML4 177 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 FOXH1O75593 365 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 IGFBP4P22692 258 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 OPRK1P41145 380 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 CFHR1Q03591 330 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 Q6AWC8 147 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 PPP1R32Q7Z5V6 425 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 MAP1LC3AQ9H492 121 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 NGBQ9NPG2 151 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 AP5S1Q9NUS5 200 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 SOX21Q9Y651 276 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-213ENST00000636759 A4D1N5 150 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 C5orf49A4QMS7 147 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 HIGD1CA8MV81 97 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 E9PLN8 166 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 K7ESF4 209 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 PRTN3P24158 256 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 PPIFP30405 207 aaKnown RBP5.63□□□□□ -1.51
SCN1A-213ENST00000636759 FXYD2P54710 66 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 ATP5L2Q7Z4Y8 100 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 NHLRC2Q8NBF2 726 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 SSMEM1Q8WWF3 244 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 PTH2Q96A98 100 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 NCKAP5O14513 1909 aa5.63□□□□□ -1.51
SCN1A-213ENST00000636759 TRBV20-1A0A075B6N2 111 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 FRG2CA6NGY1 282 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 C21orf140B9A014 251 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 TMEM262E9PQX1 116 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 CCDC179H3BU77 68 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 IGLV3-1P01715 115 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 GFERP55789 205 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 Q6ZS49 121 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 URB1-AS1Q96HZ7 61 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 TPPP3Q9BW30 176 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 F5P12259 2224 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 IGKV1-12A0A0C4DH73 117 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 E9PLD3 99 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 SNCGO76070 127 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 IGKV1D-12P01611 117 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 AREGP15514 252 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 RP1P56715 2156 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 SPINK9Q5DT21 86 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 GDF5OSQ5U4N7 250 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 TEPPQ6URK8 271 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 ATP6V0E2Q8NHE4 81 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 ABHD17AQ96GS6 310 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 PPDPFQ9H3Y8 114 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 IGLL5B9A064 214 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 ERVK11-1P61568 191 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 Q6ZPA2 131 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 Q6ZSR3 168 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 DEFB119Q8N690 84 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 OR5AN1Q8NGI8 311 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 PIGCQ92535 297 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 ZDHHC16Q969W1 377 aa5.62□□□□□ -1.51
SCN1A-213ENST00000636759 MRPS17Q9Y2R5 130 aaKnown RBP5.62□□□□□ -1.51
SCN1A-213ENST00000636759 NCOA6Q14686 2063 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-213ENST00000636759 IGKV1-27A0A075B6S5 117 aa5.61□□□□□ -1.51
SCN1A-213ENST00000636759 TMEM8BA6NDV4 472 aa5.61□□□□□ -1.51
SCN1A-213ENST00000636759 TNFSF11O14788 317 aa5.61□□□□□ -1.51
SCN1A-213ENST00000636759 ZNF137PP52743 207 aa5.61□□□□□ -1.51
SCN1A-213ENST00000636759 ATP5IP56385 69 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-213ENST00000636759 PRSS3P2Q8NHM4 247 aa5.61□□□□□ -1.51
SCN1A-213ENST00000636759 FAM168AQ92567 244 aa5.61□□□□□ -1.51
SCN1A-213ENST00000636759 TMUB1Q9BVT8 246 aa5.61□□□□□ -1.51
SCN1A-213ENST00000636759 PRDM6Q9NQX0 595 aa5.61□□□□□ -1.51
SCN1A-213ENST00000636759 IDI2-AS1Q9NZ38 188 aa5.61□□□□□ -1.51
SCN1A-213ENST00000636759 POLDIP2Q9Y2S7 368 aa5.61□□□□□ -1.51
SCN1A-213ENST00000636759 LOXL2Q9Y4K0 774 aa5.61□□□□□ -1.51
SCN1A-213ENST00000636759 INSIG2Q9Y5U4 225 aa5.61□□□□□ -1.51
SCN1A-213ENST00000636759 IGHV1OR21-1A0A087WYE8 117 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms