RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 RAB40CQ96S21 281 aa10.51□□□□□ -0.73
PNKP-218ENST00000625299 DIABLOQ9NR28 239 aa10.51□□□□□ -0.73
PNKP-218ENST00000625299 BLOC1S6Q9UL45 172 aa10.51□□□□□ -0.73
PNKP-218ENST00000625299 HELTA6NFD8 242 aa10.5□□□□□ -0.73
PNKP-218ENST00000625299 CD74P04233 296 aa10.5□□□□□ -0.73
PNKP-218ENST00000625299 HTN3P15516 51 aa10.5□□□□□ -0.73
PNKP-218ENST00000625299 DHRS11Q6UWP2 260 aa10.5□□□□□ -0.73
PNKP-218ENST00000625299 OR5H2Q8NGV7 314 aa10.5□□□□□ -0.73
PNKP-218ENST00000625299 NRG4Q8WWG1 115 aa10.5□□□□□ -0.73
PNKP-218ENST00000625299 TMEM230Q96A57 120 aa10.5□□□□□ -0.73
PNKP-218ENST00000625299 MRGPRFQ96AM1 343 aa10.5□□□□□ -0.73
PNKP-218ENST00000625299 CNBD2Q96M20 576 aa10.5□□□□□ -0.73
PNKP-218ENST00000625299 C1QTNF4Q9BXJ3 329 aa10.5□□□□□ -0.73
PNKP-218ENST00000625299 SSR3Q9UNL2 185 aa10.5□□□□□ -0.73
PNKP-218ENST00000625299 LRP1BQ9NZR2 4599 aa10.5□□□□□ -0.73
PNKP-218ENST00000625299 A0A0A6YYH2 397 aa10.49□□□□□ -0.73
PNKP-218ENST00000625299 A6NJ64 397 aa10.49□□□□□ -0.73
PNKP-218ENST00000625299 SPART-AS1P0CW21 52 aa10.49□□□□□ -0.73
PNKP-218ENST00000625299 SNCAP37840 140 aa10.49□□□□□ -0.73
PNKP-218ENST00000625299 HSPE1P61604 102 aaKnown RBP10.49□□□□□ -0.73
PNKP-218ENST00000625299 NUTF2P61970 127 aaKnown RBP10.49□□□□□ -0.73
PNKP-218ENST00000625299 SEC22AQ96IW7 307 aa10.49□□□□□ -0.73
PNKP-218ENST00000625299 NACAE9PAV3 2078 aa10.49□□□□□ -0.73
PNKP-218ENST00000625299 IGHV3OR16-12A0A075B7B8 117 aa10.48□□□□□ -0.73
PNKP-218ENST00000625299 CRYBB3P26998 211 aa10.48□□□□□ -0.73
PNKP-218ENST00000625299 S100GP29377 79 aa10.48□□□□□ -0.73
PNKP-218ENST00000625299 EIF2B2P49770 351 aaKnown RBP10.48□□□□□ -0.73
PNKP-218ENST00000625299 IZUMO4Q1ZYL8 232 aa10.48□□□□□ -0.73
PNKP-218ENST00000625299 TBC1D26Q86UD7 250 aa10.48□□□□□ -0.73
PNKP-218ENST00000625299 SLC35G3Q8N808 338 aa10.48□□□□□ -0.73
PNKP-218ENST00000625299 RNF167Q9H6Y7 350 aa10.48□□□□□ -0.73
PNKP-218ENST00000625299 MRPL36Q9P0J6 103 aaKnown RBP10.48□□□□□ -0.73
PNKP-218ENST00000625299 CLN5O75503 358 aa10.47□□□□□ -0.73
PNKP-218ENST00000625299 SCGB2A1O75556 95 aa10.47□□□□□ -0.73
PNKP-218ENST00000625299 IGKV1-39P01597 117 aa10.47□□□□□ -0.73
PNKP-218ENST00000625299 IGKV1D-39P04432 117 aa10.47□□□□□ -0.73
PNKP-218ENST00000625299 OPRK1P41145 380 aa10.47□□□□□ -0.73
PNKP-218ENST00000625299 SCAND1P57086 179 aa10.47□□□□□ -0.73
PNKP-218ENST00000625299 TAS2R46P59540 309 aa10.47□□□□□ -0.73
PNKP-218ENST00000625299 KCTD21Q4G0X4 260 aa10.47□□□□□ -0.73
PNKP-218ENST00000625299 OR6F1Q8NGZ6 308 aa10.47□□□□□ -0.73
PNKP-218ENST00000625299 CDK2AP2O75956 126 aa10.46□□□□□ -0.73
PNKP-218ENST00000625299 HOXA1P49639 335 aaPredicted RBP10.46□□□□□ -0.73
PNKP-218ENST00000625299 FXYD7P58549 80 aa10.46□□□□□ -0.73
PNKP-218ENST00000625299 SNRPD3P62318 126 aaKnown RBP10.46□□□□□ -0.73
PNKP-218ENST00000625299 TNP2Q05952 138 aa10.46□□□□□ -0.73
PNKP-218ENST00000625299 TIGITQ495A1 244 aa10.46□□□□□ -0.73
PNKP-218ENST00000625299 FAM210BQ96KR6 192 aa10.46□□□□□ -0.73
PNKP-218ENST00000625299 LOC100506127A0A0U1RQW1 187 aa10.45□□□□□ -0.74
PNKP-218ENST00000625299 TMEM189A5PLL7 270 aa10.45□□□□□ -0.74
PNKP-218ENST00000625299 CORTO00230 105 aa10.45□□□□□ -0.74
PNKP-218ENST00000625299 IGKV3-20P01619 116 aa10.45□□□□□ -0.74
PNKP-218ENST00000625299 HLA-DMAP28067 261 aa10.45□□□□□ -0.74
PNKP-218ENST00000625299 HRH1P35367 487 aa10.45□□□□□ -0.74
PNKP-218ENST00000625299 SUB1P53999 127 aaKnown RBP eCLIP10.45□□□□□ -0.74
PNKP-218ENST00000625299 MLANAQ16655 118 aa10.45□□□□□ -0.74
PNKP-218ENST00000625299 RNF212Q495C1 297 aa10.45□□□□□ -0.74
PNKP-218ENST00000625299 FAM222AQ5U5X8 452 aa10.45□□□□□ -0.74
PNKP-218ENST00000625299 NIPSNAP3BQ9BS92 247 aa10.45□□□□□ -0.74
PNKP-218ENST00000625299 PDCD10Q9BUL8 212 aa10.45□□□□□ -0.74
PNKP-218ENST00000625299 FNDC4Q9H6D8 234 aaPredicted RBP10.45□□□□□ -0.74
PNKP-218ENST00000625299 FAM90A26D6RGX4 464 aa10.44□□□□□ -0.74
PNKP-218ENST00000625299 ANKRD65E5RJM6 399 aa10.44□□□□□ -0.74
PNKP-218ENST00000625299 H3BMM0 161 aa10.44□□□□□ -0.74
PNKP-218ENST00000625299 HNRNPCP07910 306 aaKnown RBP eCLIP10.44□□□□□ -0.74
PNKP-218ENST00000625299 RNASE2P10153 161 aaKnown RBP10.44□□□□□ -0.74
PNKP-218ENST00000625299 TSPAN5P62079 268 aa10.44□□□□□ -0.74
PNKP-218ENST00000625299 ZNF705AQ6ZN79 300 aaPredicted RBP10.44□□□□□ -0.74
PNKP-218ENST00000625299 OR4X1Q8NH49 305 aa10.44□□□□□ -0.74
PNKP-218ENST00000625299 GLMPQ8WWB7 406 aa10.44□□□□□ -0.74
PNKP-218ENST00000625299 ENY2Q9NPA8 101 aa10.44□□□□□ -0.74
PNKP-218ENST00000625299 FAM212BQ9NTI7 297 aaPredicted RBP10.44□□□□□ -0.74
PNKP-218ENST00000625299 DKK2Q9UBU2 259 aa10.44□□□□□ -0.74
PNKP-218ENST00000625299 ANAPC10Q9UM13 185 aa10.44□□□□□ -0.74
PNKP-218ENST00000625299 TMED3Q9Y3Q3 217 aa10.44□□□□□ -0.74
PNKP-218ENST00000625299 RFNGQ9Y644 331 aa10.44□□□□□ -0.74
PNKP-218ENST00000625299 ZNF705FA8MVS1 300 aaPredicted RBP10.43□□□□□ -0.74
PNKP-218ENST00000625299 ZNF705DP0CH99 300 aaPredicted RBP10.43□□□□□ -0.74
PNKP-218ENST00000625299 ZNF705BP0CI00 300 aaPredicted RBP10.43□□□□□ -0.74
PNKP-218ENST00000625299 ETV6P41212 452 aa10.43□□□□□ -0.74
PNKP-218ENST00000625299 HSPA13P48723 471 aa10.43□□□□□ -0.74
PNKP-218ENST00000625299 AKR1C2P52895 323 aa10.43□□□□□ -0.74
PNKP-218ENST00000625299 AP2S1P53680 142 aaPredicted RBP10.43□□□□□ -0.74
PNKP-218ENST00000625299 TAS2R20P59543 309 aa10.43□□□□□ -0.74
PNKP-218ENST00000625299 GABARAPL2P60520 117 aa10.43□□□□□ -0.74
PNKP-218ENST00000625299 TMEM69Q5SWH9 247 aa10.43□□□□□ -0.74
PNKP-218ENST00000625299 LPCAT3Q6P1A2 487 aa10.43□□□□□ -0.74
PNKP-218ENST00000625299 TMEM88Q6PEY1 159 aa10.43□□□□□ -0.74
PNKP-218ENST00000625299 C16orf54Q6UWD8 224 aa10.43□□□□□ -0.74
PNKP-218ENST00000625299 IZUMO2Q6UXV1 221 aa10.43□□□□□ -0.74
PNKP-218ENST00000625299 S100A16Q96FQ6 103 aaKnown RBP10.43□□□□□ -0.74
PNKP-218ENST00000625299 NEU1Q99519 415 aa10.43□□□□□ -0.74
PNKP-218ENST00000625299 APOBP04114 4563 aaKnown RBP10.43□□□□□ -0.74
PNKP-218ENST00000625299 HERC1Q15751 4861 aa10.42□□□□□ -0.74
PNKP-218ENST00000625299 TEX48A0A1B0GUV7 120 aa10.42□□□□□ -0.74
PNKP-218ENST00000625299 SMIM9A6NGZ8 99 aa10.42□□□□□ -0.74
PNKP-218ENST00000625299 IGKV1-17P01599 117 aa10.42□□□□□ -0.74
PNKP-218ENST00000625299 HLA-DRB4P13762 266 aa10.42□□□□□ -0.74
PNKP-218ENST00000625299 DEFB1P60022 68 aa10.42□□□□□ -0.74
PNKP-218ENST00000625299 SPARTQ8N0X7 666 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms