RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 CCDC144NLQ6NUI1 221 aa4.21□□□□□ -1.74
VPS13D-214ENST00000620676 AGMATQ9BSE5 352 aa4.21□□□□□ -1.74
VPS13D-214ENST00000620676 TCF19Q9Y242 345 aa4.21□□□□□ -1.74
VPS13D-214ENST00000620676 IGKV1-27A0A075B6S5 117 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 TRAV21A0A0B4J279 112 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 CCL3P10147 92 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 RNASE4P34096 147 aaKnown RBP4.2□□□□□ -1.74
VPS13D-214ENST00000620676 NTF4P34130 210 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 KIR2DS2P43631 304 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 HS3ST6Q96QI5 342 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 IGLC7A0M8Q6 106 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 M0R381 172 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 LYL1P12980 280 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 COL22A1Q8NFW1 1626 aaPredicted RBP4.2□□□□□ -1.74
VPS13D-214ENST00000620676 ZNF815PA8K554 130 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 NPIPB5A8MRT5 1133 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 IGKCP01834 107 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 PRDX2P32119 198 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 RASL11AQ6T310 242 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 RASL11BQ9BPW5 248 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 GAGE12JA6NER3 117 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 GAGE7O76087 117 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 GAGE12FP0CL80 117 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 GAGE12GP0CL81 117 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 GAGE12IP0CL82 117 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 AREGP15514 252 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 GAGE4Q13068 117 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 FAM53AQ6NSI3 398 aaPredicted RBP4.2□□□□□ -1.74
VPS13D-214ENST00000620676 CIARTQ8N365 385 aaPredicted RBP4.2□□□□□ -1.74
VPS13D-214ENST00000620676 C1orf43Q9BWL3 253 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 RBPMS2Q6ZRY4 209 aaKnown RBP4.2□□□□□ -1.74
VPS13D-214ENST00000620676 CCL13Q99616 98 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 D6R8Y8 96 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 TMPRSS2O15393 492 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 OR1L8Q8NGR8 309 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 COX14Q96I36 57 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 NPFFR1Q9GZQ6 430 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 MS4A6AQ9H2W1 248 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 K7EQS6 105 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 VDAC2P45880 294 aaPredicted RBP4.2□□□□□ -1.74
VPS13D-214ENST00000620676 FAM74A4Q5TZK3 123 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 GAGE2AQ6NT46 116 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 PNRC2Q9NPJ4 139 aaKnown RBP4.2□□□□□ -1.74
VPS13D-214ENST00000620676 C9JAW5 83 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 SMAD7O15105 426 aaKnown RBP4.2□□□□□ -1.74
VPS13D-214ENST00000620676 OR9G9P0C7N8 305 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 TM4SF19Q96DZ7 209 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 E9PLN8 166 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 SLC25A47Q6Q0C1 308 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 LYPD6BQ8NI32 183 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 GGTLC1Q9BX51 225 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 NOTCH3Q9UM47 2321 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 FAM168AQ92567 244 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 STRCP1A6NGW2 1772 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 ADAMTSL1Q8N6G6 1762 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 HIST1H4AP62805 103 aaKnown RBP4.2□□□□□ -1.74
VPS13D-214ENST00000620676 TMEM178AQ8NBL3 297 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 ZNF625Q96I27 306 aaPredicted RBP4.2□□□□□ -1.74
VPS13D-214ENST00000620676 VCX2Q9H322 139 aa4.2□□□□□ -1.74
VPS13D-214ENST00000620676 RPUSD1Q9UJJ7 312 aaKnown RBP4.2□□□□□ -1.74
VPS13D-214ENST00000620676 MFAP4P55083 255 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 LHX8Q68G74 356 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 IGKV2-40A0A087WW87 121 aaPredicted RBP4.19□□□□□ -1.74
VPS13D-214ENST00000620676 TMEM8BA6NDV4 472 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 FAM90A27PA6NNH2 459 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 IGKV1-5P01602 117 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 IGKV2D-40P01614 121 aaPredicted RBP4.19□□□□□ -1.74
VPS13D-214ENST00000620676 COX6CP09669 75 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 SAA1P0DJI8 122 aaPredicted RBP4.19□□□□□ -1.74
VPS13D-214ENST00000620676 CXXC4Q9H2H0 198 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 IGKV3-20P01619 116 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 ID1P41134 155 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 CHCHD1Q96BP2 118 aaKnown RBP4.19□□□□□ -1.74
VPS13D-214ENST00000620676 CHCHD5Q9BSY4 110 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 FAM201AQ5SY85 155 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 Q9H3A6 140 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 KLF12Q9Y4X4 402 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 A0A0G2JRQ6 117 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 EFNB3Q15768 340 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 PPP1R17O96001 155 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 MMP23AO75900 390 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 PRB2P02812 416 aaPredicted RBP4.19□□□□□ -1.74
VPS13D-214ENST00000620676 C2orf82Q6UX34 121 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 SRFP11831 508 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 TCF15Q12870 199 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 ZNF474Q6S9Z5 364 aaPredicted RBP4.19□□□□□ -1.74
VPS13D-214ENST00000620676 OR13A1Q8NGR1 328 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 OR13C6PQ8NH95 151 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 DLX4Q92988 240 aaPredicted RBP4.19□□□□□ -1.74
VPS13D-214ENST00000620676 FGF12P61328 243 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 IGFL4Q6B9Z1 124 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 C1RLQ9NZP8 487 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 GLRXP35754 106 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 OSTCQ9NRP0 149 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 LINC01565O15544 149 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 MLNRO43193 412 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 COL9A1P20849 921 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 DSCR4P56555 118 aaPredicted RBP4.19□□□□□ -1.74
VPS13D-214ENST00000620676 GAGE5Q13069 117 aa4.19□□□□□ -1.74
VPS13D-214ENST00000620676 GAGE6Q13070 117 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 139.8 ms