RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 DIABLOQ9NR28 239 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 CCL28Q9NRJ3 127 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 NDUFA4L2Q9NRX3 87 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 FAM212BQ9NTI7 297 aaPredicted RBP4.61□□□□□ -1.67
CUX1-220ENST00000607092 APLNQ9ULZ1 77 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 V9GYH0 126 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 DNAH17Q9UFH2 4485 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 TEX50A0A1B0GTY4 177 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 TMEM235A6NFC5 223 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 CGB1A6NKQ9 187 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 FAM25AB3EWG3 89 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 FAM25CB3EWG5 89 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 FAM25GB3EWG6 89 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 K7EIM0 57 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 CORTO00230 105 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 SULT1C2O00338 296 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 ST8SIA3O43173 380 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 TNFSF12O43508 249 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 XRCC3O43542 346 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 GSTZ1O43708 216 aaPredicted RBP4.6□□□□□ -1.67
CUX1-220ENST00000607092 GNG7O60262 68 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 HPGDSO60760 199 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 ATG12O94817 140 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 AMBPP02760 352 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 IL7P13232 177 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 ELK1P19419 428 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 TFPI2P48307 235 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 BRWD1-AS2P59051 145 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 MRPS10P82664 201 aaKnown RBP4.6□□□□□ -1.67
CUX1-220ENST00000607092 ERHP84090 104 aaKnown RBP4.6□□□□□ -1.67
CUX1-220ENST00000607092 WT1-ASQ06250 92 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 PYDC2Q56P42 97 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 LPCAT3Q6P1A2 487 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 TCF24Q7RTU0 167 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 SAMD12Q8N8I0 201 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 OR5AP2Q8NGF4 316 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 NUDCD2Q8WVJ2 157 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 S100A16Q96FQ6 103 aaKnown RBP4.6□□□□□ -1.67
CUX1-220ENST00000607092 GRAMD2BQ96HH9 432 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 C7orf50Q9BRJ6 194 aaKnown RBP4.6□□□□□ -1.67
CUX1-220ENST00000607092 CHRDL1Q9BU40 450 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 NDUFAF3Q9BU61 184 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 RHBDL2Q9NX52 303 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 EXTL2Q9UBQ6 330 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 OR51B2Q9Y5P1 312 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 SELENOKQ9Y6D0 94 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 PKHD1P08F94 4074 aa4.6□□□□□ -1.67
CUX1-220ENST00000607092 DNAH11Q96DT5 4516 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 IGHV4-4A0A075B6R2 117 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 TMEM189A5PLL7 270 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 HELTA6NFD8 242 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 PRSS29PA6NIE9 313 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 CENPXA8MT69 81 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 ZNF705EA8MWA4 302 aaPredicted RBP4.59□□□□□ -1.67
CUX1-220ENST00000607092 S1PR2O95136 353 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 IFNA21P01568 189 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 IFNA17P01571 189 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 HLA-DMBP28068 263 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 SNCAP37840 140 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 HOXA1P49639 335 aaPredicted RBP4.59□□□□□ -1.67
CUX1-220ENST00000607092 AP2S1P53680 142 aaPredicted RBP4.59□□□□□ -1.67
CUX1-220ENST00000607092 SUB1P53999 127 aaKnown RBP eCLIP4.59□□□□□ -1.67
CUX1-220ENST00000607092 OR10A3P58181 314 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 TAS2R46P59540 309 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 FXYD4P59646 89 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 IL18Q14116 193 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 ODF1Q14990 250 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 BAK1Q16611 211 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 LGALS9BQ3B8N2 356 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 UBE2NLQ5JXB2 153 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 TRIQKQ629K1 86 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 FAM90A2PQ658T7 463 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 ZNF600Q6ZNG1 722 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 POM121L12Q8N7R1 296 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 ZNF114Q8NC26 417 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 OR10W1Q8NGF6 305 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 OR51H1Q8NH63 302 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 OR4A16Q8NH70 328 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 VSIRQ9H7M9 311 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 TMEM14BQ9NUH8 114 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 COPZ2Q9P299 210 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 DMBT1Q9UGM3 2413 aaPredicted RBP4.59□□□□□ -1.67
CUX1-220ENST00000607092 TBC1D24Q9ULP9 559 aa4.59□□□□□ -1.67
CUX1-220ENST00000607092 ABCA13Q86UQ4 5058 aa4.59□□□□□ -1.68
CUX1-220ENST00000607092 IGKV3-7A0A075B6H7 116 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 TRAV18A0A075B6X5 111 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 TRAV3A0A0B4J244 114 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 IGHV4-28A0A0C4DH34 117 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 GPR31O00270 319 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 PLA2G10O15496 165 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 ZNF207O43670 478 aaKnown RBP4.58□□□□□ -1.68
CUX1-220ENST00000607092 KRASP01116 189 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 NPPCP23582 126 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 INPP1P49441 399 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 DEFB131AP59861 70 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 SSBP1Q04837 148 aaKnown RBP4.58□□□□□ -1.68
CUX1-220ENST00000607092 DHRS11Q6UWP2 260 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 ZNF818PQ6ZRF7 136 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 TMEM17Q86X19 198 aa4.58□□□□□ -1.68
CUX1-220ENST00000607092 GBGT1Q8N5D6 347 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms