RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 LOC105371242A0A075B767 164 aa14.98□□□□□ -0.01
UPF1-210ENST00000600689 IGKV1-16P04430 117 aa14.98□□□□□ -0.01
UPF1-210ENST00000600689 ZNF138P52744 262 aa14.98□□□□□ -0.01
UPF1-210ENST00000600689 CT45A1Q5HYN5 189 aa14.98□□□□□ -0.01
UPF1-210ENST00000600689 VWA1Q6PCB0 445 aa14.98□□□□□ -0.01
UPF1-210ENST00000600689 FDCSPQ8NFU4 85 aa14.98□□□□□ -0.01
UPF1-210ENST00000600689 CT45A3Q8NHU0 189 aa14.98□□□□□ -0.01
UPF1-210ENST00000600689 NEUROG1Q92886 237 aa14.98□□□□□ -0.01
UPF1-210ENST00000600689 IDI2-AS1Q9NZ38 188 aa14.98□□□□□ -0.01
UPF1-210ENST00000600689 SMG1Q96Q15 3661 aaKnown RBP14.98□□□□□ -0.01
UPF1-210ENST00000600689 SPRY3O43610 288 aa14.97□□□□□ -0.01
UPF1-210ENST00000600689 KLF3P57682 345 aaPredicted RBP14.97□□□□□ -0.01
UPF1-210ENST00000600689 MOGAT3Q86VF5 341 aa14.97□□□□□ -0.01
UPF1-210ENST00000600689 WDR31Q8NA23 367 aa14.97□□□□□ -0.01
UPF1-210ENST00000600689 NUP35Q8NFH5 326 aa14.97□□□□□ -0.01
UPF1-210ENST00000600689 ORAOV1Q8WV07 137 aa14.97□□□□□ -0.01
UPF1-210ENST00000600689 SNRNP40Q96DI7 357 aaKnown RBP14.97□□□□□ -0.01
UPF1-210ENST00000600689 NAV3Q8IVL0 2385 aa14.97□□□□□ -0.01
UPF1-210ENST00000600689 IZUMO1RA6ND01 250 aa14.97□□□□□ -0.01
UPF1-210ENST00000600689 ISLRO14498 428 aa14.97□□□□□ -0.01
UPF1-210ENST00000600689 APELAP0DMC3 54 aa14.97□□□□□ -0.01
UPF1-210ENST00000600689 TMPRSS3P57727 454 aa14.97□□□□□ -0.01
UPF1-210ENST00000600689 UBE2G1P62253 170 aa14.97□□□□□ -0.01
UPF1-210ENST00000600689 ZNF841Q6ZN19 808 aa14.97□□□□□ -0.01
UPF1-210ENST00000600689 CALYQ9NYX4 217 aa14.97□□□□□ -0.01
UPF1-210ENST00000600689 REG1BP48304 166 aa14.96□□□□□ -0.01
UPF1-210ENST00000600689 OR5B3Q8NH48 314 aa14.96□□□□□ -0.01
UPF1-210ENST00000600689 TNFRSF19Q9NS68 423 aa14.96□□□□□ -0.01
UPF1-210ENST00000600689 TRAV9-2A0A087WT02 112 aa14.96□□□□□ -0.01
UPF1-210ENST00000600689 HIGD1CA8MV81 97 aa14.96□□□□□ -0.01
UPF1-210ENST00000600689 CECR9P0C854 216 aa14.96□□□□□ -0.01
UPF1-210ENST00000600689 SELENOVP59797 346 aa14.96□□□□□ -0.01
UPF1-210ENST00000600689 VPS25Q9BRG1 176 aa14.96□□□□□ -0.01
UPF1-210ENST00000600689 AMMECR1Q9Y4X0 333 aaPredicted RBP14.96□□□□□ -0.01
UPF1-210ENST00000600689 DYSFO75923 2080 aa14.96□□□□□ -0.01
UPF1-210ENST00000600689 CSN3P07498 182 aa14.96□□□□□ -0.02
UPF1-210ENST00000600689 FTH1P19P0C7X4 201 aa14.96□□□□□ -0.02
UPF1-210ENST00000600689 PPOXP50336 477 aa14.96□□□□□ -0.02
UPF1-210ENST00000600689 LOXL3P58215 753 aa14.96□□□□□ -0.02
UPF1-210ENST00000600689 C19orf35Q6ZS72 473 aa14.96□□□□□ -0.02
UPF1-210ENST00000600689 NUDT10Q8NFP7 164 aa14.96□□□□□ -0.02
UPF1-210ENST00000600689 NUDT11Q96G61 164 aa14.96□□□□□ -0.02
UPF1-210ENST00000600689 AKAP13Q12802 2813 aa14.95□□□□□ -0.02
UPF1-210ENST00000600689 PLCE1Q9P212 2302 aa14.95□□□□□ -0.02
UPF1-210ENST00000600689 NUDT3O95989 172 aa14.95□□□□□ -0.02
UPF1-210ENST00000600689 SMIM27A0A1W2PRY6 76 aa14.95□□□□□ -0.02
UPF1-210ENST00000600689 SRRM4A7MD48 611 aaKnown RBP14.95□□□□□ -0.02
UPF1-210ENST00000600689 COTL1Q14019 142 aa14.95□□□□□ -0.02
UPF1-210ENST00000600689 IGHV3-21A0A0B4J1V1 117 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 MMP23AO75900 390 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 C8orf88P0DMB2 117 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 TNFSF4P23510 183 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 TMEM178AQ8NBL3 297 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 ZNF596Q8TC21 504 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 CHODLQ9H9P2 273 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 JPT1Q9UK76 154 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 LY96Q9Y6Y9 160 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 ZNF292O60281 2723 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 ATMQ13315 3056 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 OR4C46A6NHA9 309 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 TAS2R45P59539 299 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 LDLRAD2Q5SZI1 272 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 TANC2Q9HCD6 1990 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 OR2T8A6NH00 312 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 PIP4P1Q86T03 277 aa14.94□□□□□ -0.02
UPF1-210ENST00000600689 IGHV2-26A0A0B4J1V2 119 aa14.93□□□□□ -0.02
UPF1-210ENST00000600689 IGHV2OR16-5A0A0B4J2B6 119 aa14.93□□□□□ -0.02
UPF1-210ENST00000600689 C10orf55Q5SWW7 151 aa14.93□□□□□ -0.02
UPF1-210ENST00000600689 FAM90A1Q86YD7 464 aa14.93□□□□□ -0.02
UPF1-210ENST00000600689 IGF2BP2-AS1Q96M15 143 aa14.93□□□□□ -0.02
UPF1-210ENST00000600689 ASCL2Q99929 193 aa14.93□□□□□ -0.02
UPF1-210ENST00000600689 PSG1P11464 419 aa14.93□□□□□ -0.02
UPF1-210ENST00000600689 SSX8Q7RTT4 187 aa14.93□□□□□ -0.02
UPF1-210ENST00000600689 SLC25A33Q9BSK2 321 aa14.93□□□□□ -0.02
UPF1-210ENST00000600689 RIF1Q5UIP0 2472 aaKnown RBP14.93□□□□□ -0.02
UPF1-210ENST00000600689 POLEQ07864 2286 aa14.92□□□□□ -0.02
UPF1-210ENST00000600689 VWC2LB2RUY7 222 aa14.92□□□□□ -0.02
UPF1-210ENST00000600689 REG1AP05451 166 aa14.92□□□□□ -0.02
UPF1-210ENST00000600689 OR2V2Q96R30 315 aa14.92□□□□□ -0.02
UPF1-210ENST00000600689 TMEM14BQ9NUH8 114 aa14.92□□□□□ -0.02
UPF1-210ENST00000600689 INTS1Q8N201 2190 aaKnown RBP14.92□□□□□ -0.02
UPF1-210ENST00000600689 PKDREJQ9NTG1 2253 aa14.92□□□□□ -0.02
UPF1-210ENST00000600689 COX7A2P2O60397 106 aa14.92□□□□□ -0.02
UPF1-210ENST00000600689 TBR1Q16650 682 aa14.92□□□□□ -0.02
UPF1-210ENST00000600689 MSMPQ1L6U9 139 aa14.92□□□□□ -0.02
UPF1-210ENST00000600689 GCSAMQ8N6F7 178 aa14.92□□□□□ -0.02
UPF1-210ENST00000600689 PRR7Q8TB68 274 aa14.92□□□□□ -0.02
UPF1-210ENST00000600689 PGLYRP4Q96LB8 373 aa14.92□□□□□ -0.02
UPF1-210ENST00000600689 IGLC7A0M8Q6 106 aa14.91□□□□□ -0.02
UPF1-210ENST00000600689 MGST3O14880 152 aa14.91□□□□□ -0.02
UPF1-210ENST00000600689 ORM2P19652 201 aa14.91□□□□□ -0.02
UPF1-210ENST00000600689 OR4F17Q8NGA8 305 aa14.91□□□□□ -0.02
UPF1-210ENST00000600689 CORO2AQ92828 525 aa14.91□□□□□ -0.02
UPF1-210ENST00000600689 ZFHX2Q9C0A1 2572 aaPredicted RBP14.91□□□□□ -0.02
UPF1-210ENST00000600689 PTPRBP23467 1997 aa14.91□□□□□ -0.02
UPF1-210ENST00000600689 TRGV8A0A0C4DH27 118 aa14.91□□□□□ -0.02
UPF1-210ENST00000600689 MUC21A0A0G2JKD1 596 aa14.91□□□□□ -0.02
UPF1-210ENST00000600689 MUC21A0A140T8X8 626 aa14.91□□□□□ -0.02
UPF1-210ENST00000600689 MUC21Q5SSG8 566 aa14.91□□□□□ -0.02
UPF1-210ENST00000600689 SAP30LQ9HAJ7 183 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms