RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	TMEM116	Q8NCL8	245 aa		6.59	□□□□□ -1.35
SSBP4-208	ENST00000600628	WWC2-AS2	Q96NR7	200 aa		6.59	□□□□□ -1.35
SSBP4-208	ENST00000600628	TM2D3	Q9BRN9	247 aa		6.59	□□□□□ -1.35
SSBP4-208	ENST00000600628	ZFAND3	Q9H8U3	227 aa		6.59	□□□□□ -1.35
SSBP4-208	ENST00000600628	PALMD	Q9NP74	551 aa		6.59	□□□□□ -1.35
SSBP4-208	ENST00000600628	UFC1	Q9Y3C8	167 aa		6.59	□□□□□ -1.35
SSBP4-208	ENST00000600628	TMED3	Q9Y3Q3	217 aa		6.59	□□□□□ -1.35
SSBP4-208	ENST00000600628	IGHV3-35	A0A0C4DH35	117 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	ZNF320	A2RRD8	509 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	PRSS46	E5RG02	174 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	TSPAN4	O14817	238 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	SCAF4	O95104	1147 aa	Known RBP	6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	NXPH3	O95157	252 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	ANXA3	P12429	323 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	SNCA	P37840	140 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	SUB1	P53999	127 aa	Known RBP eCLIP	6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	ATP5I	P56385	69 aa	Predicted RBP	6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	DHRS2	Q13268	280 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	MLANA	Q16655	118 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	TRIQK	Q629K1	86 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	FAM90A2P	Q658T7	463 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	ZNF57	Q68EA5	555 aa	Predicted RBP	6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	PRSS54	Q6PEW0	395 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	RNASEH2C	Q8TDP1	164 aa	Known RBP	6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	MISP3	Q96FF7	219 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	WDR89	Q96FK6	387 aa	Predicted RBP	6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	FAM110A	Q9BQ89	295 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	CCDC32	Q9BV29	185 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	SMPX	Q9UHP9	88 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	FLVCR2	Q9UPI3	526 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628		U3KQ87	197 aa		6.58	□□□□□ -1.36
SSBP4-208	ENST00000600628	TENM2	Q9NT68	2774 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	C9orf170	A2RU37	121 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	CLN5	O75503	358 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	IGHV3-48	P01763	117 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	CD7	P09564	240 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	OR4E1	P0C645	316 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	NPBWR1	P48145	328 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	HOXA1	P49639	335 aa	Predicted RBP	6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	ID3	Q02535	119 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	REL	Q04864	619 aa	Predicted RBP	6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	TMED4	Q7Z7H5	227 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	GTSCR1	Q86UQ5	136 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	DTD1	Q8TEA8	209 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	DYNLRB2	Q8TF09	96 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	PDCD10	Q9BUL8	212 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	RBKS	Q9H477	322 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	VSIR	Q9H7M9	311 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	TBC1D24	Q9ULP9	559 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628		U3KQE9	123 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	DNAH1	Q9P2D7	4330 aa		6.57	□□□□□ -1.36
SSBP4-208	ENST00000600628	IGHV7-4-1	A0A0J9YVY3	117 aa		6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	MPTX1	A8MV57	137 aa		6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	CHEK1	O14757	476 aa		6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	NUPL2	O15504	423 aa	Known RBP	6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	LYRM1	O43325	122 aa		6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	IGLC1	P0CG04	106 aa		6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	SLC25A4	P12235	298 aa		6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	CRYBB3	P26998	211 aa		6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628		Q56UQ5	140 aa		6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	BTNL8	Q6UX41	500 aa		6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	TOMM20L	Q6UXN7	152 aa		6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	ZNF600	Q6ZNG1	722 aa		6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	LYG2	Q86SG7	212 aa		6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	DUSP18	Q8NEJ0	188 aa		6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	SLC24A4	Q8NFF2	622 aa		6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	RNASE11	Q8TAA1	199 aa	Known RBP	6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	MITD1	Q8WV92	249 aa		6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	SPAG8	Q99932	426 aa	Predicted RBP	6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	NEURL2	Q9BR09	285 aa		6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	HEYL	Q9NQ87	328 aa	Predicted RBP	6.56	□□□□□ -1.36
SSBP4-208	ENST00000600628	IGKV1D-37	A0A075B6S9	117 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	RBMY1B	A6NDE4	496 aa	Known RBP	6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	RBMY1E	A6NEQ0	496 aa	Known RBP	6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	CEBPZOS	A8MTT3	80 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	GNG7	O60262	68 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	TCRB	P04435	133 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	RBMY1D	P0C7P1	496 aa	Known RBP	6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	ANXA7	P20073	488 aa	Known RBP	6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	VAMP1	P23763	118 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	NPY1R	P25929	384 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	GPX4	P36969	197 aa	Predicted RBP	6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	YPEL3	P61236	119 aa	Predicted RBP	6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	IFITM3	Q01628	133 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	ASAH1	Q13510	395 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	HAGH	Q16775	308 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	GGNBP1	Q5YKI7	109 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	NOXA1	Q86UR1	476 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	LILRB2	Q8N423	598 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	UBAC2	Q8NBM4	344 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	OR4D5	Q8NGN0	318 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	S100Z	Q8WXG8	99 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	PINX1	Q96BK5	328 aa	Known RBP	6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	RCHY1	Q96PM5	261 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	CITED4	Q96RK1	184 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	RNF2	Q99496	336 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	ZMAT4	Q9H898	229 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	ENY2	Q9NPA8	101 aa		6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	PLEC	Q15149	4684 aa	Known RBP	6.55	□□□□□ -1.36
SSBP4-208	ENST00000600628	IGKV1OR2-108	A0A075B7D4	117 aa		6.54	□□□□□ -1.36

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