RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PSPNO60542 156 aa17■□□□□ 0.31
UPF1-207ENST00000599848 FBLIM1Q8WUP2 373 aa17■□□□□ 0.31
UPF1-207ENST00000599848 SRSF8Q9BRL6 282 aaKnown RBP16.99■□□□□ 0.31
UPF1-207ENST00000599848 RMI2Q96E14 147 aa16.99■□□□□ 0.31
UPF1-207ENST00000599848 TRAV8-6A0A0B4J262 113 aa16.99■□□□□ 0.31
UPF1-207ENST00000599848 NAT1P18440 290 aa16.99■□□□□ 0.31
UPF1-207ENST00000599848 IL36BQ9NZH7 164 aa16.99■□□□□ 0.31
UPF1-207ENST00000599848 FHITP49789 147 aa16.98■□□□□ 0.31
UPF1-207ENST00000599848 CKS1BP61024 79 aa16.98■□□□□ 0.31
UPF1-207ENST00000599848 RNF182Q8N6D2 247 aa16.98■□□□□ 0.31
UPF1-207ENST00000599848 RCHY1Q96PM5 261 aa16.98■□□□□ 0.31
UPF1-207ENST00000599848 CGAP01215 116 aa16.98■□□□□ 0.31
UPF1-207ENST00000599848 CBLN2Q8IUK8 224 aa16.98■□□□□ 0.31
UPF1-207ENST00000599848 SRSF1Q07955 248 aaKnown RBP eCLIP16.98■□□□□ 0.314e-11■■□□□ 13.4
UPF1-207ENST00000599848 GLRX5Q86SX6 157 aa16.98■□□□□ 0.31
UPF1-207ENST00000599848 ZNFX1Q9P2E3 1918 aaKnown RBP16.98■□□□□ 0.31
UPF1-207ENST00000599848 CACNA1GO43497 2377 aa16.98■□□□□ 0.31
UPF1-207ENST00000599848 C1QTNF9BB2RNN3 333 aa16.98■□□□□ 0.31
UPF1-207ENST00000599848 MBNL3Q9NUK0 354 aaKnown RBP16.98■□□□□ 0.31
UPF1-207ENST00000599848 A0A1W2PRE2 83 aa16.97■□□□□ 0.31
UPF1-207ENST00000599848 FOXF2Q12947 444 aa16.97■□□□□ 0.31
UPF1-207ENST00000599848 LCNL1Q6ZST4 164 aa16.97■□□□□ 0.31
UPF1-207ENST00000599848 A6NNC1 897 aa16.97■□□□□ 0.31
UPF1-207ENST00000599848 F8WEM9 126 aa16.97■□□□□ 0.31
UPF1-207ENST00000599848 NBL1P41271 181 aa16.97■□□□□ 0.31
UPF1-207ENST00000599848 RCC1LQ96I51 464 aaKnown RBP16.97■□□□□ 0.31
UPF1-207ENST00000599848 NINQ8N4C6 2090 aa16.97■□□□□ 0.31
UPF1-207ENST00000599848 MIA3Q5JRA6 1907 aa16.97■□□□□ 0.31
UPF1-207ENST00000599848 RP1P56715 2156 aa16.97■□□□□ 0.31
UPF1-207ENST00000599848 A0A1B0GTI1 187 aa16.97■□□□□ 0.31
UPF1-207ENST00000599848 GPHA2Q96T91 129 aa16.97■□□□□ 0.31
UPF1-207ENST00000599848 PKIGQ9Y2B9 76 aa16.97■□□□□ 0.31
UPF1-207ENST00000599848 LINC00469Q8N7U9 141 aa16.96■□□□□ 0.31
UPF1-207ENST00000599848 C15orf32Q32M92 178 aa16.96■□□□□ 0.31
UPF1-207ENST00000599848 BEX4Q9NWD9 120 aaPredicted RBP16.96■□□□□ 0.31
UPF1-207ENST00000599848 IGHV1-3A0A0C4DH29 117 aa16.96■□□□□ 0.31
UPF1-207ENST00000599848 MUC21Q5SSG8 566 aa16.96■□□□□ 0.31
UPF1-207ENST00000599848 ZNF318Q5VUA4 2279 aa16.96■□□□□ 0.31
UPF1-207ENST00000599848 PINLYPA6NC86 204 aa16.96■□□□□ 0.31
UPF1-207ENST00000599848 C5orf64Q2M2E5 130 aa16.96■□□□□ 0.31
UPF1-207ENST00000599848 APOC4P55056 127 aa16.95■□□□□ 0.3
UPF1-207ENST00000599848 LINC00477Q96M19 166 aa16.95■□□□□ 0.3
UPF1-207ENST00000599848 ZMAT4Q9H898 229 aa16.95■□□□□ 0.3
UPF1-207ENST00000599848 ANKRD31Q8N7Z5 1873 aa16.95■□□□□ 0.3
UPF1-207ENST00000599848 SEPSECSQ9HD40 501 aaKnown RBP16.95■□□□□ 0.3
UPF1-207ENST00000599848 IGKV1D-43A0A0B4J1Z2 117 aa16.95■□□□□ 0.3
UPF1-207ENST00000599848 SDHCQ99643 169 aaPredicted RBP16.95■□□□□ 0.3
UPF1-207ENST00000599848 TCF21O43680 179 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 CD28P10747 220 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 DUTP33316 252 aaKnown RBP16.94■□□□□ 0.3
UPF1-207ENST00000599848 TRAV9-2A0A087WT02 112 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 PRR32B1ATL7 298 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 C1QL1O75973 258 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 SMIM13P0DJ93 91 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 S100A7L2Q5SY68 101 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 C1QL2Q7Z5L3 287 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 APOHP02749 345 aaPredicted RBP16.94■□□□□ 0.3
UPF1-207ENST00000599848 IGFL3Q6UXB1 125 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 PSG8Q9UQ74 426 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 GRIFINA4D1Z8 144 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 RNF223E7ERA6 249 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 TYMSP04818 313 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 NHLRC3Q5JS37 347 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 PRTN3P24158 256 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 ARL6IP6Q8N6S5 226 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 PEF1Q9UBV8 284 aaKnown RBP16.94■□□□□ 0.3
UPF1-207ENST00000599848 ELF5Q9UKW6 265 aaPredicted RBP16.94■□□□□ 0.3
UPF1-207ENST00000599848 PARP14Q460N5 1801 aa16.94■□□□□ 0.3
UPF1-207ENST00000599848 IZUMO1RA6ND01 250 aa16.93■□□□□ 0.3
UPF1-207ENST00000599848 PLNP26678 52 aa16.93■□□□□ 0.3
UPF1-207ENST00000599848 ZNF837Q96EG3 531 aaPredicted RBP16.93■□□□□ 0.3
UPF1-207ENST00000599848 FOXC2Q99958 501 aa16.93■□□□□ 0.3
UPF1-207ENST00000599848 EPDR1Q9UM22 224 aa16.93■□□□□ 0.3
UPF1-207ENST00000599848 BIVMQ86UB2 503 aa16.93■□□□□ 0.3
UPF1-207ENST00000599848 FLVCR1-AS1Q8TAF5 88 aa16.93■□□□□ 0.3
UPF1-207ENST00000599848 NUP214P35658 2090 aaPredicted RBP16.93■□□□□ 0.3
UPF1-207ENST00000599848 A0A1B0GWJ7 208 aa16.93■□□□□ 0.3
UPF1-207ENST00000599848 TDGF1P3P51864 188 aa16.93■□□□□ 0.3
UPF1-207ENST00000599848 PLP1P60201 277 aa16.93■□□□□ 0.3
UPF1-207ENST00000599848 GLMPQ8WWB7 406 aa16.93■□□□□ 0.3
UPF1-207ENST00000599848 WFDC6Q9BQY6 131 aa16.93■□□□□ 0.3
UPF1-207ENST00000599848 TMEM200BQ69YZ2 307 aa16.92■□□□□ 0.3
UPF1-207ENST00000599848 IGHV3OR16-8A0A075B7F1 116 aa16.92■□□□□ 0.3
UPF1-207ENST00000599848 CXCL2P19875 107 aa16.92■□□□□ 0.3
UPF1-207ENST00000599848 GGNQ86UU5 652 aa16.92■□□□□ 0.3
UPF1-207ENST00000599848 FAM186AA6NE01 2351 aa16.92■□□□□ 0.3
UPF1-207ENST00000599848 CRIPAKQ8N1N5 446 aa16.92■□□□□ 0.3
UPF1-207ENST00000599848 ZCCHC24Q8N2G6 241 aaKnown RBP16.92■□□□□ 0.3
UPF1-207ENST00000599848 MIR17HGQ75NE6 70 aa16.91■□□□□ 0.3
UPF1-207ENST00000599848 Q96MF0 132 aa16.91■□□□□ 0.3
UPF1-207ENST00000599848 BPESC1Q9GZL8 116 aa16.91■□□□□ 0.3
UPF1-207ENST00000599848 IGFBP3P17936 291 aaPredicted RBP16.91■□□□□ 0.3
UPF1-207ENST00000599848 SLC25A48Q6ZT89 311 aaKnown RBP16.91■□□□□ 0.3
UPF1-207ENST00000599848 FAM90A2PQ658T7 463 aa16.91■□□□□ 0.3
UPF1-207ENST00000599848 BRWD3Q6RI45 1802 aa16.91■□□□□ 0.3
UPF1-207ENST00000599848 OR5A1Q8NGJ0 315 aa16.91■□□□□ 0.3
UPF1-207ENST00000599848 ARFGEF1Q9Y6D6 1849 aa16.91■□□□□ 0.3
UPF1-207ENST00000599848 JPT2Q9H910 190 aa16.9■□□□□ 0.3
UPF1-207ENST00000599848 CCDC88CQ9P219 2028 aa16.9■□□□□ 0.3
UPF1-207ENST00000599848 TRGV1A0A0A0MS02 117 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms