RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 VAMP1P23763 118 aa12.14□□□□□ -0.47
TRIM28-213ENST00000598355 RELQ04864 619 aaPredicted RBP12.14□□□□□ -0.47
TRIM28-213ENST00000598355 CNPY1Q3B7I2 92 aa12.14□□□□□ -0.47
TRIM28-213ENST00000598355 BTNL8Q6UX41 500 aa12.14□□□□□ -0.47
TRIM28-213ENST00000598355 SLC24A4Q8NFF2 622 aa12.14□□□□□ -0.47
TRIM28-213ENST00000598355 CCDC32Q9BV29 185 aa12.14□□□□□ -0.47
TRIM28-213ENST00000598355 MRPL36Q9P0J6 103 aaKnown RBP12.14□□□□□ -0.47
TRIM28-213ENST00000598355 TRAV25A0A0B4J276 109 aa12.13□□□□□ -0.47
TRIM28-213ENST00000598355 GNG7O60262 68 aa12.13□□□□□ -0.47
TRIM28-213ENST00000598355 NPBWR1P48145 328 aa12.13□□□□□ -0.47
TRIM28-213ENST00000598355 GTSCR1Q86UQ5 136 aa12.13□□□□□ -0.47
TRIM28-213ENST00000598355 DUSP18Q8NEJ0 188 aa12.13□□□□□ -0.47
TRIM28-213ENST00000598355 OR4X1Q8NH49 305 aa12.13□□□□□ -0.47
TRIM28-213ENST00000598355 RNASEH2CQ8TDP1 164 aaKnown RBP12.13□□□□□ -0.47
TRIM28-213ENST00000598355 WDR89Q96FK6 387 aaPredicted RBP12.13□□□□□ -0.47
TRIM28-213ENST00000598355 HEYLQ9NQ87 328 aaPredicted RBP12.13□□□□□ -0.47
TRIM28-213ENST00000598355 TMED3Q9Y3Q3 217 aa12.13□□□□□ -0.47
TRIM28-213ENST00000598355 HUWE1Q7Z6Z7 4374 aaKnown RBP12.12□□□□□ -0.47
TRIM28-213ENST00000598355 C9orf170A2RU37 121 aa12.12□□□□□ -0.47
TRIM28-213ENST00000598355 CENPXA8MT69 81 aa12.12□□□□□ -0.47
TRIM28-213ENST00000598355 CEBPZOSA8MTT3 80 aa12.12□□□□□ -0.47
TRIM28-213ENST00000598355 FAM90A26D6RGX4 464 aa12.12□□□□□ -0.47
TRIM28-213ENST00000598355 NPY1RP25929 384 aa12.12□□□□□ -0.47
TRIM28-213ENST00000598355 OPRK1P41145 380 aa12.12□□□□□ -0.47
TRIM28-213ENST00000598355 DHRS2Q13268 280 aa12.12□□□□□ -0.47
TRIM28-213ENST00000598355 ZFAND3Q9H8U3 227 aa12.12□□□□□ -0.47
TRIM28-213ENST00000598355 PTTG2Q9NZH5 202 aa12.12□□□□□ -0.47
TRIM28-213ENST00000598355 FLVCR2Q9UPI3 526 aa12.12□□□□□ -0.47
TRIM28-213ENST00000598355 LYRM1O43325 122 aa12.11□□□□□ -0.47
TRIM28-213ENST00000598355 CLN5O75503 358 aa12.11□□□□□ -0.47
TRIM28-213ENST00000598355 NXPH3O95157 252 aa12.11□□□□□ -0.47
TRIM28-213ENST00000598355 TMEM50AO95807 157 aa12.11□□□□□ -0.47
TRIM28-213ENST00000598355 SBSPONQ8IVN8 264 aa12.11□□□□□ -0.47
TRIM28-213ENST00000598355 TMEM116Q8NCL8 245 aa12.11□□□□□ -0.47
TRIM28-213ENST00000598355 DTD1Q8TEA8 209 aa12.11□□□□□ -0.47
TRIM28-213ENST00000598355 RBKSQ9H477 322 aa12.11□□□□□ -0.47
TRIM28-213ENST00000598355 LINC00854A0A1B0GVQ3 168 aa12.1□□□□□ -0.47
TRIM28-213ENST00000598355 RPS10-NUDT3A0A1W2PQS6 291 aa12.1□□□□□ -0.47
TRIM28-213ENST00000598355 IGKV1-17P01599 117 aa12.1□□□□□ -0.47
TRIM28-213ENST00000598355 CD7P09564 240 aa12.1□□□□□ -0.47
TRIM28-213ENST00000598355 OR4E1P0C645 316 aa12.1□□□□□ -0.47
TRIM28-213ENST00000598355 CD81P60033 236 aa12.1□□□□□ -0.47
TRIM28-213ENST00000598355 MLANAQ16655 118 aa12.1□□□□□ -0.47
TRIM28-213ENST00000598355 LINC00322Q6ZN03 302 aaPredicted RBP12.1□□□□□ -0.47
TRIM28-213ENST00000598355 ZNF600Q6ZNG1 722 aa12.1□□□□□ -0.47
TRIM28-213ENST00000598355 LYG2Q86SG7 212 aa12.1□□□□□ -0.47
TRIM28-213ENST00000598355 OR1S1Q8NH92 325 aa12.1□□□□□ -0.47
TRIM28-213ENST00000598355 S100ZQ8WXG8 99 aa12.1□□□□□ -0.47
TRIM28-213ENST00000598355 NEURL2Q9BR09 285 aa12.1□□□□□ -0.47
TRIM28-213ENST00000598355 HIPK2Q9H2X6 1198 aa12.1□□□□□ -0.47
TRIM28-213ENST00000598355 U3KQ87 197 aa12.1□□□□□ -0.47
TRIM28-213ENST00000598355 IGHV3OR16-8A0A075B7F1 116 aa12.09□□□□□ -0.47
TRIM28-213ENST00000598355 IGHV7-4-1A0A0J9YVY3 117 aa12.09□□□□□ -0.47
TRIM28-213ENST00000598355 TSPAN4O14817 238 aa12.09□□□□□ -0.47
TRIM28-213ENST00000598355 SCAF4O95104 1147 aaKnown RBP12.09□□□□□ -0.47
TRIM28-213ENST00000598355 SLC25A4P12235 298 aa12.09□□□□□ -0.47
TRIM28-213ENST00000598355 ATP5IP56385 69 aaPredicted RBP12.09□□□□□ -0.47
TRIM28-213ENST00000598355 GGNBP1Q5YKI7 109 aa12.09□□□□□ -0.47
TRIM28-213ENST00000598355 PRSS54Q6PEW0 395 aa12.09□□□□□ -0.47
TRIM28-213ENST00000598355 TOMM20LQ6UXN7 152 aa12.09□□□□□ -0.47
TRIM28-213ENST00000598355 NOXA1Q86UR1 476 aa12.09□□□□□ -0.47
TRIM28-213ENST00000598355 SPAG8Q99932 426 aaPredicted RBP12.09□□□□□ -0.47
TRIM28-213ENST00000598355 TM2D3Q9BRN9 247 aa12.09□□□□□ -0.47
TRIM28-213ENST00000598355 C20orf24Q9BUV8 137 aa12.09□□□□□ -0.47
TRIM28-213ENST00000598355 C20orf85Q9H1P6 137 aa12.09□□□□□ -0.47
TRIM28-213ENST00000598355 SMPXQ9UHP9 88 aa12.09□□□□□ -0.47
TRIM28-213ENST00000598355 IGLC1P0CG04 106 aa12.08□□□□□ -0.48
TRIM28-213ENST00000598355 ANXA7P20073 488 aaKnown RBP12.08□□□□□ -0.48
TRIM28-213ENST00000598355 ASCL2Q99929 193 aa12.08□□□□□ -0.48
TRIM28-213ENST00000598355 TBC1D24Q9ULP9 559 aa12.08□□□□□ -0.48
TRIM28-213ENST00000598355 TRAV30A0A087WSZ9 112 aa12.07□□□□□ -0.48
TRIM28-213ENST00000598355 CHEK1O14757 476 aa12.07□□□□□ -0.48
TRIM28-213ENST00000598355 ZNF207O43670 478 aaKnown RBP12.07□□□□□ -0.48
TRIM28-213ENST00000598355 HOXB5P09067 269 aa12.07□□□□□ -0.48
TRIM28-213ENST00000598355 RND2P52198 227 aa12.07□□□□□ -0.48
TRIM28-213ENST00000598355 GUCA2BQ16661 112 aa12.07□□□□□ -0.48
TRIM28-213ENST00000598355 FAM90A2PQ658T7 463 aa12.07□□□□□ -0.48
TRIM28-213ENST00000598355 COQ8AQ8NI60 647 aa12.07□□□□□ -0.48
TRIM28-213ENST00000598355 GINS3Q9BRX5 216 aa12.07□□□□□ -0.48
TRIM28-213ENST00000598355 WFDC10AQ9H1F0 79 aa12.07□□□□□ -0.48
TRIM28-213ENST00000598355 VSIRQ9H7M9 311 aa12.07□□□□□ -0.48
TRIM28-213ENST00000598355 BATF3Q9NR55 127 aa12.07□□□□□ -0.48
TRIM28-213ENST00000598355 PUS1Q9Y606 427 aaKnown RBP eCLIP12.07□□□□□ -0.48
TRIM28-213ENST00000598355 SELENOKQ9Y6D0 94 aa12.07□□□□□ -0.48
TRIM28-213ENST00000598355 U3KQK5 164 aa12.07□□□□□ -0.48
TRIM28-213ENST00000598355 MPTX1A8MV57 137 aa12.06□□□□□ -0.48
TRIM28-213ENST00000598355 ADAP1O75689 374 aa12.06□□□□□ -0.48
TRIM28-213ENST00000598355 IFNA10P01566 189 aa12.06□□□□□ -0.48
TRIM28-213ENST00000598355 TCRBP04435 133 aa12.06□□□□□ -0.48
TRIM28-213ENST00000598355 ETFRF1Q6IPR1 90 aa12.06□□□□□ -0.48
TRIM28-213ENST00000598355 SLC16A13Q7RTY0 426 aa12.06□□□□□ -0.48
TRIM28-213ENST00000598355 OR1S2Q8NGQ3 325 aa12.06□□□□□ -0.48
TRIM28-213ENST00000598355 MITD1Q8WV92 249 aa12.06□□□□□ -0.48
TRIM28-213ENST00000598355 FAM110AQ9BQ89 295 aa12.06□□□□□ -0.48
TRIM28-213ENST00000598355 RHPN1-AS1Q9BWJ2 59 aa12.06□□□□□ -0.48
TRIM28-213ENST00000598355 TRAV14DV4A0A0A6YYC5 116 aa12.05□□□□□ -0.48
TRIM28-213ENST00000598355 PRSS46E5RG02 174 aa12.05□□□□□ -0.48
TRIM28-213ENST00000598355 SYNGR2O43760 224 aa12.05□□□□□ -0.48
TRIM28-213ENST00000598355 SCGB2A1O75556 95 aa12.05□□□□□ -0.48
TRIM28-213ENST00000598355 MED6O75586 246 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms