RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 IFNA5P01569 189 aa19.57■□□□□ 0.72
SHMT1-207ENST00000580002 FGF7P21781 194 aa19.57■□□□□ 0.72
SHMT1-207ENST00000580002 RND2P52198 227 aa19.57■□□□□ 0.72
SHMT1-207ENST00000580002 RHOGP84095 191 aa19.57■□□□□ 0.72
SHMT1-207ENST00000580002 AKR1C1Q04828 323 aa19.57■□□□□ 0.72
SHMT1-207ENST00000580002 ZNF266Q14584 549 aa19.57■□□□□ 0.72
SHMT1-207ENST00000580002 BTNL8Q6UX41 500 aa19.57■□□□□ 0.72
SHMT1-207ENST00000580002 GINS3Q9BRX5 216 aa19.57■□□□□ 0.72
SHMT1-207ENST00000580002 GGACTQ9BVM4 153 aa19.57■□□□□ 0.72
SHMT1-207ENST00000580002 WDR83OSQ9Y284 106 aa19.57■□□□□ 0.72
SHMT1-207ENST00000580002 TPT1P13693 172 aaKnown RBP19.57■□□□□ 0.72
SHMT1-207ENST00000580002 FAM74A1Q5RGS3 127 aa19.57■□□□□ 0.72
SHMT1-207ENST00000580002 HIST2H2BDQ6DRA6 164 aa19.57■□□□□ 0.72
SHMT1-207ENST00000580002 TMED6Q8WW62 240 aa19.57■□□□□ 0.72
SHMT1-207ENST00000580002 CACNG8Q8WXS5 425 aa19.57■□□□□ 0.72
SHMT1-207ENST00000580002 SLC25A32Q9H2D1 315 aa19.57■□□□□ 0.72
SHMT1-207ENST00000580002 NPVFQ9HCQ7 196 aa19.57■□□□□ 0.72
SHMT1-207ENST00000580002 EXOSC2Q13868 293 aaKnown RBP19.56■□□□□ 0.72
SHMT1-207ENST00000580002 ZNF680Q8NEM1 530 aa19.56■□□□□ 0.72
SHMT1-207ENST00000580002 MGST2Q99735 147 aa19.56■□□□□ 0.72
SHMT1-207ENST00000580002 LSM4Q9Y4Z0 139 aaKnown RBP19.56■□□□□ 0.72
SHMT1-207ENST00000580002 KLK9Q2XQG4 91 aa19.55■□□□□ 0.72
SHMT1-207ENST00000580002 TMEM182Q6ZP80 229 aaPredicted RBP19.55■□□□□ 0.72
SHMT1-207ENST00000580002 OR1L6Q8NGR2 347 aa19.55■□□□□ 0.72
SHMT1-207ENST00000580002 PCNPQ8WW12 178 aaKnown RBP19.55■□□□□ 0.72
SHMT1-207ENST00000580002 SLC35E1Q96K37 410 aa19.55■□□□□ 0.72
SHMT1-207ENST00000580002 KLK9Q9UKQ9 250 aa19.55■□□□□ 0.72
SHMT1-207ENST00000580002 IGKV1D-37A0A075B6S9 117 aa19.55■□□□□ 0.72
SHMT1-207ENST00000580002 F8W735 103 aaPredicted RBP19.55■□□□□ 0.72
SHMT1-207ENST00000580002 IGLV1-40P01703 118 aa19.55■□□□□ 0.72
SHMT1-207ENST00000580002 ACSM6Q6P461 480 aa19.55■□□□□ 0.72
SHMT1-207ENST00000580002 SCGB1C1Q8TD33 95 aa19.55■□□□□ 0.72
SHMT1-207ENST00000580002 SLA2Q9H6Q3 261 aa19.55■□□□□ 0.72
SHMT1-207ENST00000580002 SETD2Q9BYW2 2564 aaPredicted RBP19.54■□□□□ 0.72
SHMT1-207ENST00000580002 CORTO00230 105 aa19.54■□□□□ 0.72
SHMT1-207ENST00000580002 TSPAN9O75954 239 aa19.54■□□□□ 0.72
SHMT1-207ENST00000580002 TRGV3P03979 118 aa19.54■□□□□ 0.72
SHMT1-207ENST00000580002 PF4V1P10720 104 aa19.54■□□□□ 0.72
SHMT1-207ENST00000580002 GATA2P23769 480 aaPredicted RBP19.54■□□□□ 0.72
SHMT1-207ENST00000580002 C15orf32Q32M92 178 aa19.54■□□□□ 0.72
SHMT1-207ENST00000580002 TMEM144Q7Z5S9 345 aa19.54■□□□□ 0.72
SHMT1-207ENST00000580002 JMJD1CQ15652 2540 aa19.53■□□□□ 0.72
SHMT1-207ENST00000580002 NPCDR1Q9BY65 106 aa19.53■□□□□ 0.72
SHMT1-207ENST00000580002 TCF21O43680 179 aa19.52■□□□□ 0.72
SHMT1-207ENST00000580002 SCAF4O95104 1147 aaKnown RBP19.52■□□□□ 0.72
SHMT1-207ENST00000580002 CRYBA1P05813 215 aa19.52■□□□□ 0.72
SHMT1-207ENST00000580002 ZNF580Q9UK33 172 aa19.52■□□□□ 0.72
SHMT1-207ENST00000580002 SPP1P10451 314 aa19.52■□□□□ 0.71
SHMT1-207ENST00000580002 OR10J1P30954 320 aa19.52■□□□□ 0.71
SHMT1-207ENST00000580002 TPPP2P59282 170 aa19.52■□□□□ 0.71
SHMT1-207ENST00000580002 ZNF90Q03938 601 aa19.52■□□□□ 0.71
SHMT1-207ENST00000580002 TEPPQ6URK8 271 aa19.52■□□□□ 0.71
SHMT1-207ENST00000580002 TMEM116Q8NCL8 245 aa19.52■□□□□ 0.71
SHMT1-207ENST00000580002 PARD6GQ9BYG4 376 aaPredicted RBP19.52■□□□□ 0.71
SHMT1-207ENST00000580002 VSIRQ9H7M9 311 aa19.52■□□□□ 0.71
SHMT1-207ENST00000580002 RPS10-NUDT3A0A1W2PQS6 291 aa19.51■□□□□ 0.71
SHMT1-207ENST00000580002 FNDC10F2Z333 226 aa19.51■□□□□ 0.71
SHMT1-207ENST00000580002 AGPAT2O15120 278 aa19.51■□□□□ 0.71
SHMT1-207ENST00000580002 IGHG4P01861 327 aa19.51■□□□□ 0.71
SHMT1-207ENST00000580002 HIST1H1BP16401 226 aaKnown RBP19.51■□□□□ 0.71
SHMT1-207ENST00000580002 ETFRF1Q6IPR1 90 aa19.51■□□□□ 0.71
SHMT1-207ENST00000580002 NECAP1Q8NC96 275 aa19.51■□□□□ 0.71
SHMT1-207ENST00000580002 GGTLC1Q9BX51 225 aa19.51■□□□□ 0.71
SHMT1-207ENST00000580002 PSMB11A5LHX3 300 aa19.5■□□□□ 0.71
SHMT1-207ENST00000580002 RAB9AP51151 201 aa19.5■□□□□ 0.71
SHMT1-207ENST00000580002 MIC13Q5XKP0 118 aa19.5■□□□□ 0.71
SHMT1-207ENST00000580002 OR2G3Q8NGZ4 309 aa19.5■□□□□ 0.71
SHMT1-207ENST00000580002 JMJD8Q96S16 334 aa19.5■□□□□ 0.71
SHMT1-207ENST00000580002 IGHV3-11P01762 117 aa19.49■□□□□ 0.71
SHMT1-207ENST00000580002 PSMB8P28062 276 aa19.49■□□□□ 0.71
SHMT1-207ENST00000580002 CENPVQ7Z7K6 275 aaPredicted RBP19.49■□□□□ 0.71
SHMT1-207ENST00000580002 OR4X1Q8NH49 305 aa19.49■□□□□ 0.71
SHMT1-207ENST00000580002 C21orf62Q9NYP8 219 aa19.49■□□□□ 0.71
SHMT1-207ENST00000580002 THYN1Q9P016 225 aa19.49■□□□□ 0.71
SHMT1-207ENST00000580002 C2CD3Q4AC94 2353 aa19.49■□□□□ 0.71
SHMT1-207ENST00000580002 CAMLGP49069 296 aa19.49■□□□□ 0.71
SHMT1-207ENST00000580002 KIAA0141Q14154 515 aaPredicted RBP19.49■□□□□ 0.71
SHMT1-207ENST00000580002 THAP8Q8NA92 274 aa19.49■□□□□ 0.71
SHMT1-207ENST00000580002 LINC01006Q8NI28 216 aa19.49■□□□□ 0.71
SHMT1-207ENST00000580002 CCDC140Q96MF4 163 aa19.49■□□□□ 0.71
SHMT1-207ENST00000580002 EIF3GO75821 320 aaKnown RBP eCLIP19.48■□□□□ 0.71
SHMT1-207ENST00000580002 RPLP1P05386 114 aaKnown RBP19.48■□□□□ 0.71
SHMT1-207ENST00000580002 EIF5AP63241 154 aaKnown RBP19.48■□□□□ 0.71
SHMT1-207ENST00000580002 TIGITQ495A1 244 aa19.48■□□□□ 0.71
SHMT1-207ENST00000580002 GCSAMLQ5JQS6 135 aa19.48■□□□□ 0.71
SHMT1-207ENST00000580002 ZNF502Q8TBZ5 544 aa19.48■□□□□ 0.71
SHMT1-207ENST00000580002 SLC45A2Q9UMX9 530 aa19.48■□□□□ 0.71
SHMT1-207ENST00000580002 OR2T8A6NH00 312 aa19.47■□□□□ 0.71
SHMT1-207ENST00000580002 ZFP92A6NM28 416 aa19.47■□□□□ 0.71
SHMT1-207ENST00000580002 CYB5BO43169 146 aa19.47■□□□□ 0.71
SHMT1-207ENST00000580002 CLN5O75503 358 aa19.47■□□□□ 0.71
SHMT1-207ENST00000580002 IGLC1P0CG04 106 aa19.47■□□□□ 0.71
SHMT1-207ENST00000580002 FHITP49789 147 aa19.47■□□□□ 0.71
SHMT1-207ENST00000580002 ELLP55199 621 aaPredicted RBP19.47■□□□□ 0.71
SHMT1-207ENST00000580002 ATP5G2Q06055 141 aa19.47■□□□□ 0.71
SHMT1-207ENST00000580002 Q56UQ5 140 aa19.47■□□□□ 0.71
SHMT1-207ENST00000580002 IGKV1-17P01599 117 aa19.47■□□□□ 0.71
SHMT1-207ENST00000580002 SEC11BP0C7V7 166 aa19.47■□□□□ 0.71
SHMT1-207ENST00000580002 LINC00869P0C866 280 aa19.47■□□□□ 0.71
SHMT1-207ENST00000580002 MFAP4P55083 255 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms