RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 BUB1B-PAK6H3BSN5 160 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 CCL24O00175 119 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 UPK2O00526 184 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 SLC25A20O43772 301 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 PAGE4O60829 102 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 CA1P00915 261 aaPredicted RBP2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 HLA-DRB1P01911 266 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 HSPB1P04792 205 aaKnown RBP2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 NBEAP1P0C6P0 100 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 SAA2P0DJI9 122 aaPredicted RBP2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 PSG1P11464 419 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 GP9P14770 177 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 SLAQ13239 276 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 HIST3H3Q16695 136 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 MORN2Q502X0 79 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 MIC13Q5XKP0 118 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 PRSS57Q6UWY2 283 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 LINC00305Q7Z4B0 112 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 FLVCR1-AS1Q8TAF5 88 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 FAM131CQ96AQ9 280 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 NABP2Q9BQ15 211 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 RHPN1-AS1Q9BWJ2 59 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 RNF167Q9H6Y7 350 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 TNCP24821 2201 aa2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 SIPA1L3O60292 1781 aaPredicted RBP2.42□□□□□ -2.02
SMCHD1-203ENST00000577880 IGHV4-30-2A0A087WSY4 118 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 TRBV5-3A0A0A0MS03 114 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 C5orf52A6NGY3 159 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 H3BTX0 84 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 J3QR89 54 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 OVOL3O00110 214 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 BCL2L11O43521 198 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 CNTFRP26992 372 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 FOXG1P55316 489 aaPredicted RBP2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 EFNB1P98172 346 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 TNFRSF9Q07011 255 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 FUT5Q11128 374 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 KIF26BQ2KJY2 2108 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 KLF17Q5JT82 389 aaPredicted RBP2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 FAM90A2PQ658T7 463 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 TMEM144Q7Z5S9 345 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 LRTM2Q8N967 370 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 PIFOQ8TCI5 191 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 MESP1Q9BRJ9 268 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 MAP1LC3AQ9H492 121 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 MBNL3Q9NUK0 354 aaKnown RBP2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 ZFHX4Q86UP3 3567 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 LY6G6EA0A0G2JKS1 128 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 PQLC2LA1A4F0 135 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 RBFOX2O43251 390 aaKnown RBP eCLIP2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 RAMP3O60896 148 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 MPC2O95563 127 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 SOD3P08294 240 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 WT1P19544 449 aaPredicted RBP2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 SRIP30626 198 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 CCKARP32238 428 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 MYCNOSP40205 109 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 VAX1Q5SQQ9 334 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 MUC21Q5SSG8 566 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 TEX261Q6UWH6 196 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 ANGPTL6Q8NI99 470 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 C10orf105Q8TEF2 133 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 NRGNQ92686 78 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 GPR146Q96CH1 333 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 ZNF256Q9Y2P7 627 aaPredicted RBP2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 FAM215AQ9Y5M1 114 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 U3KQA8 63 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 HTTP42858 3142 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 MED12Q93074 2177 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 DOCK9Q9BZ29 2069 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 IGHV4-61A0A0C4DH41 118 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 TMEM250H0YL14 139 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 CLDN34H7C241 214 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 FGF16O43320 207 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 ATP5LO75964 103 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 VENTXO95231 258 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 LGALS3P17931 250 aaKnown RBP2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 GAS1P54826 345 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 KRTDAPP60985 99 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 EWSR1Q01844 656 aaKnown RBP eCLIP2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 BSXQ3C1V8 233 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 DHRS11Q6UWP2 260 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 C9orf139Q6ZV77 190 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 TMEM256Q8N2U0 113 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 RARRES2Q99969 163 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 TMEM191AQ9H0A3 160 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 IL36RNQ9UBH0 155 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 VAX2Q9UIW0 290 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 TNFSF18Q9UNG2 199 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 MIA3Q5JRA6 1907 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 REV3LO60673 3130 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 TRBV20OR9-2A0A075B6H5 130 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 TMEM238LA0A1B0GVL6 79 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 A6NJY4 79 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 FABP5P3A8MUU1 101 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 B4DEV8 164 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 CD5LO43866 347 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 ICMTO60725 284 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 INSL3P51460 131 aa2.41□□□□□ -2.02
SMCHD1-203ENST00000577880 NANOS3P60323 173 aaKnown RBP2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms