RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 SOCS1O15524 211 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 HLA-DQB1P01920 261 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 USF1P22415 310 aaPredicted RBP5.42□□□□□ -1.54
VPS53-217ENST00000575100 CDK2P24941 298 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 F2RP25116 425 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 ETV6P41212 452 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 DLX1P56177 255 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 IFITM3Q01628 133 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 ZNF846Q147U1 533 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 RBMS2Q15434 407 aaKnown RBP5.42□□□□□ -1.54
VPS53-217ENST00000575100 LRRC75BQ2VPJ9 315 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 ZNF585BQ52M93 769 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 OLFML2AQ68BL7 652 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 SUMO4Q6EEV6 95 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 SPSB3Q6PJ21 355 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 Q6YL49 198 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 LINC00299Q6ZSB3 139 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 PNKDQ8N490 385 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 ZNRF1Q8ND25 227 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 OR4C13Q8NGP0 309 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 TERB2Q8NHR7 220 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 ITLN1Q8WWA0 313 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 CCL19Q99731 98 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 RTL8AQ9BWD3 113 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 QTRT1Q9BXR0 403 aaKnown RBP5.42□□□□□ -1.54
VPS53-217ENST00000575100 ABCG5Q9H222 651 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 JPT1Q9UK76 154 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 ZFP30Q9Y2G7 519 aa5.42□□□□□ -1.54
VPS53-217ENST00000575100 IGSF23A1L1A6 192 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 A6NDN8 102 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 CEACAM18A8MTB9 384 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 FOXI3A8MTJ6 420 aaPredicted RBP5.41□□□□□ -1.54
VPS53-217ENST00000575100 A8MWP6 167 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 M0R233 179 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 GEMIN2O14893 280 aaKnown RBP5.41□□□□□ -1.54
VPS53-217ENST00000575100 CRLF1O75462 422 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 LY6HO94772 140 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 ATG12O94817 140 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 IGHV4-39P01824 125 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 RPL12P30050 165 aaKnown RBP5.41□□□□□ -1.54
VPS53-217ENST00000575100 SULT1A1P50225 295 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 SULT1A2P50226 295 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 KRTAP1-1Q07627 177 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 RSU1Q15404 277 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 TAF9Q16594 264 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 OCIAD2Q56VL3 154 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 FAM201AQ5SY85 155 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 C11orf71Q6IPW1 123 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 BAP18Q8IXM2 172 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 GATD1Q8NB37 220 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 SELENOIQ9C0D9 397 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 ATG5Q9H1Y0 275 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 MS4A6AQ9H2W1 248 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 PLSCR3Q9NRY6 295 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 ANK3Q12955 4377 aaKnown RBP5.41□□□□□ -1.54
VPS53-217ENST00000575100 COL6A5A8TX70 2615 aa5.41□□□□□ -1.54
VPS53-217ENST00000575100 ARFGEF3Q5TH69 2177 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 IGLV5-52A0A0A0MRZ9 124 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 IGHV4-61A0A0C4DH41 118 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 ZNF705EA8MWA4 302 aaPredicted RBP5.4□□□□□ -1.54
VPS53-217ENST00000575100 CLDN25C9JDP6 229 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 F6UZH7 168 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 J3QT63 122 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 IGHV4-59P01825 116 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 PGA5P0DJD9 388 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 IL7P13232 177 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 FCGR2CP31995 323 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 RAB5BP61020 215 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 TNFAIP6P98066 277 aaPredicted RBP5.4□□□□□ -1.54
VPS53-217ENST00000575100 GAGE5Q13069 117 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 GAGE6Q13070 117 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 CLLU1Q5K131 121 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 C12orf54Q6X4T0 127 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 NRIP2Q9BQI9 281 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 SUCNR1Q9BXA5 334 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 PECRQ9BY49 303 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 PSG8Q9UQ74 426 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 ST3GAL6Q9Y274 331 aa5.4□□□□□ -1.54
VPS53-217ENST00000575100 PPP5D1E7EU14 171 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 LYNX1G3V0Z9 82 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 HPRT1P00492 218 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 OR9G9P0C7N8 305 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 UBBP0CG47 229 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 LYNX1P0DP58 116 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 GNB3P16520 340 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 PAX9P55771 341 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 TAS2R20P59543 309 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 NSUN5P1Q3KNT7 163 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 TMEM69Q5SWH9 247 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 AVPI1Q5T686 147 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 C6orf201Q7Z4U5 140 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 LYG1Q8N1E2 194 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 OSR2Q8N2R0 312 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 RFESDQ8TAC1 157 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 Q8WTZ3 238 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 DEDD2Q8WXF8 326 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 PTX4Q96A99 478 aa5.4□□□□□ -1.55
VPS53-217ENST00000575100 RPUSD4Q96CM3 377 aaKnown RBP5.4□□□□□ -1.55
VPS53-217ENST00000575100 S100A16Q96FQ6 103 aaKnown RBP5.4□□□□□ -1.55
VPS53-217ENST00000575100 ARHGAP5-AS1Q96IT6 56 aa5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms